Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

52180844 .. 52182735

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCAATCCATTGTAAGTTTGGATCCCATGGCCGACCTTAACTTGGAAAAAGACGTTTCAGGGGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTATACTGTAGAAATACAGTTTTTTCCGTTGCTTACTGAAAAATATTCAGAGAATGGATATGAATCAAAGGAGTTTGAAGCTGGAGGATACAAATGGAAATTGGTGTTTCACCCAAATGGAAACAAAAAGAAGAATGTAAAAGACCACATCTCCCTCTACTTGGTGATAGCTGGAGCAGATTCACTAGATAGTAGTTGGGAAGTATATGCTGATTTCAGATTGTTTCTGCTTGATCAGAATGAGGGAAACTACTTGGTTTTTGAAGATGCTTTAACAAAGAAGAAATGCTTTCATGGGGCAATGCGTAGTGCAGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTGGACGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAAGACGCAAAGGCGAGTGCCTAGCAAGGATGAAGATAGCCTCTGTATGCATACATGTTTGGAAGGTTGAGAAATTTTCATCTTTAGGTGCTAAATTTTGTTACTCTGAACCGTTCACTGCTGGGGACCATAATTGGAAGATAAAGCTTTATCCTGATGGATGTGGGGAAGGCAAGGGTAGTCATCTCTCTCTGTTTTTGGAATTGGCTAGTCCCATAACCCTCCCCCCTGGCTCAGAACTATTTGTGGAGTATAGATTTCGCATCCTAGACCAAATTCGTCATCAGCATCATGAACCTTCTAGTGGTAAGGCCTGGTTCCGTGACGGTACAAGTTTGGGTTCGCGTAGATTCATTGGACAAGAATCTTTCAGGCTGGTAGAAAATGGGTTTTTGAAGAATGATGCTTGCATGGTAGAAGCAGAGGTGACCGTCCATGGAATTTCTAAAGTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

325

Amino Acids

36.82

Weight (kDa)

6.14

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	33 - 167	1.4e-33	MATH domain
MATH	PF00917	50 - 169	2.6e-11	MATH domain
MATH_2	PF22486	192 - 316	4.9e-30	MATH domain
MATH	PF00917	197 - 318	4.4e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AccII	CGCG	1 cut(s)	865
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	4 cut(s)	593, 614, 795, 960
AfaI	GTAC	2 cut(s)	850, 972
AfiI	CCNNNNNNNGG	3 cut(s)	43, 259, 824
AflIII	ACRYGT	2 cut(s)	479, 574
AgsI	TTSAA	4 cut(s)	176, 362, 437, 916
AjnI	CCWGG	2 cut(s)	748, 833
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	179, 269, 667
AluI	AGCT	3 cut(s)	179, 269, 667
AlwI	GGATC	2 cut(s)	17, 30
AoxI	GGCC	2 cut(s)	30, 831
ApoI	RAATTY	4 cut(s)	593, 614, 795, 960
AspS9I	GGNCC	1 cut(s)	646
AsuHPI	GGTGA	4 cut(s)	78, 200, 274, 958
AvaII	GGWCC	1 cut(s)	646
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	529
BccI	CCATC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	750, 835
BciVI	GTATCC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	331
BfaI	CTAG	6 cut(s)	284, 467, 542, 729, 788, 822
BfmI	CTRYAG	2 cut(s)	105, 974
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	179
BmcAI	AGTACT	1 cut(s)	972
Bme1390I	CCNGG	2 cut(s)	750, 835
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	4 cut(s)	24, 493, 647, 839
BmrFI	CCNGG	2 cut(s)	750, 835
BmsI	GCATC	4 cut(s)	355, 792, 817, 913
BpiI	GAAGAC	1 cut(s)	529
BpmI	CTGGAG	2 cut(s)	201, 291
BsaBI	GATNNNNATC	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	27, 495, 748, 955
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 259, 824
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	750, 835
BseDI	CCNNGG	4 cut(s)	27, 495, 748, 955
BseGI	GGATG	3 cut(s)	555, 686, 783
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	3 cut(s)	43, 259, 824
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	768
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	865
BshFI	GGCC	2 cut(s)	32, 833
BslFI	GGGAC	2 cut(s)	659, 717
BslI	CCNNNNNNNGG	3 cut(s)	43, 259, 824
BsmFI	GGGAC	2 cut(s)	659, 717
BsnI	GGCC	2 cut(s)	32, 833
Bsp143I	GATC	3 cut(s)	22, 71, 331
Bsp19I	CCATGG	2 cut(s)	27, 955
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	32, 833
BspCNI	CTCAG	1 cut(s)	767
BspFNI	CGCG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	4 cut(s)	24, 493, 647, 839
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	17, 30
BsrDI	GCAATG	1 cut(s)	405
BssECI	CCNNGG	4 cut(s)	27, 495, 748, 955
BssMI	GATC	3 cut(s)	22, 71, 331
BssT1I	CCWWGG	2 cut(s)	27, 955
Bst2UI	CCWGG	2 cut(s)	750, 835
Bst4CI	ACNGT	5 cut(s)	106, 117, 633, 848, 952
BstC8I	GCNNGC	1 cut(s)	928
BstDEI	CTNAG	1 cut(s)	754
BstDSI	CCRYGG	2 cut(s)	27, 955
BstEII	GGTNACC	1 cut(s)	946
BstF5I	GGATG	3 cut(s)	555, 686, 783
BstFNI	CGCG	1 cut(s)	865
BstKTI	GATC	3 cut(s)	25, 74, 334
BstMBI	GATC	3 cut(s)	22, 71, 331
BstNI	CCWGG	2 cut(s)	750, 835
BstNSI	RCATGY	2 cut(s)	483, 578
BstPI	GGTNACC	1 cut(s)	946
BstSCI	CCNGG	2 cut(s)	748, 833
BstSFI	CTRYAG	2 cut(s)	105, 974
BstUI	CGCG	1 cut(s)	865
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	32, 833
BtgI	CCRYGG	2 cut(s)	27, 955
BtsCI	GGATG	3 cut(s)	555, 686, 783
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	928
CciI	TCATGA	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	646
CseI	GACGC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	849, 971
CviAII	CATG	7 cut(s)	28, 392, 480, 575, 812, 931, 956
CviQI	GTAC	2 cut(s)	849, 971
DdeI	CTNAG	1 cut(s)	754
DpnI	GATC	3 cut(s)	24, 73, 333
DpnII	GATC	3 cut(s)	22, 71, 331
EaeI	YGGCCR	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	27, 955
Eco147I	AGGCCT	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	646
Eco91I	GGTNACC	1 cut(s)	946
EcoO65I	GGTNACC	1 cut(s)	946
EcoRII	CCWGG	2 cut(s)	748, 833
EcoT14I	CCWWGG	2 cut(s)	27, 955
EcoT22I	ATGCAT	1 cut(s)	572
ErhI	CCWWGG	2 cut(s)	27, 955
FaeI	CATG	7 cut(s)	31, 395, 483, 578, 815, 934, 959
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	659, 717
FatI	CATG	7 cut(s)	27, 391, 479, 574, 811, 930, 955
FbaI	TGATCA	1 cut(s)	331
FokI	GGATG	3 cut(s)	562, 693, 770
FspBI	CTAG	6 cut(s)	284, 467, 542, 729, 788, 822
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	2 cut(s)	201, 291
HaeIII	GGCC	2 cut(s)	32, 833
HgaI	GACGC	1 cut(s)	534
Hin1II	CATG	7 cut(s)	31, 395, 483, 578, 815, 934, 959
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	5 cut(s)	83, 161, 278, 870, 884
HphI	GGTGA	4 cut(s)	78, 200, 274, 958
Hpy166II	GTNNAC	2 cut(s)	472, 636
Hpy188I	TCNGA	6 cut(s)	82, 148, 317, 336, 628, 757
Hpy188III	TCNNGA	3 cut(s)	434, 674, 812
Hpy8I	GTNNAC	2 cut(s)	472, 636
HpyAV	CCTTC	3 cut(s)	577, 683, 828
HpyCH4III	ACNGT	5 cut(s)	106, 117, 633, 848, 952
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	4, 410, 570, 930
HpyF3I	CTNAG	1 cut(s)	754
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	7 cut(s)	31, 395, 483, 578, 815, 934, 959
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	22, 71, 331
LmnI	GCTCC	2 cut(s)	272, 491
LweI	GCATC	4 cut(s)	355, 792, 817, 913
MaeI	CTAG	6 cut(s)	284, 467, 542, 729, 788, 822
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	620, 842, 946
MalI	GATC	3 cut(s)	24, 73, 333
MboI	GATC	3 cut(s)	22, 71, 331
MboII	GAAGA	9 cut(s)	241, 374, 391, 449, 531, 534, 565, 670, 928
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	7 cut(s)	197, 593, 614, 652, 722, 795, 960
MnlI	CCTC	8 cut(s)	176, 263, 334, 441, 490, 571, 752, 937
Mph1103I	ATGCAT	1 cut(s)	572
MseI	TTAA	2 cut(s)	39, 371
MslI	CAYNNNNRTG	2 cut(s)	213, 482
MspR9I	CCNGG	2 cut(s)	750, 835
MvaI	CCWGG	2 cut(s)	750, 835
MvnI	CGCG	1 cut(s)	865
NcoI	CCATGG	2 cut(s)	27, 955
NdeII	GATC	3 cut(s)	22, 71, 331
NlaIII	CATG	7 cut(s)	31, 395, 483, 578, 815, 934, 959
NlaIV	GGNNCC	4 cut(s)	24, 493, 647, 839
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	2 cut(s)	842, 946
NsiI	ATGCAT	1 cut(s)	572
NspI	RCATGY	2 cut(s)	483, 578
OliI	CACNNNNGTG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	811
PceI	AGGCCT	1 cut(s)	833
PciI	ACATGT	2 cut(s)	479, 574
PfeI	GAWTC	5 cut(s)	83, 161, 278, 870, 884
PscI	ACATGT	2 cut(s)	479, 574
Psp6I	CCWGG	2 cut(s)	748, 833
PspEI	GGTNACC	1 cut(s)	946
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	748, 833
PspN4I	GGNNCC	4 cut(s)	24, 493, 647, 839
PspPI	GGNCC	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	850, 972
RsaNI	GTAC	2 cut(s)	849, 971
RseI	CAYNNNNRTG	2 cut(s)	213, 482
SaqAI	TTAA	2 cut(s)	39, 371
Sau3AI	GATC	3 cut(s)	22, 71, 331
Sau96I	GGNCC	1 cut(s)	646
ScaI	AGTACT	1 cut(s)	972
ScrFI	CCNGG	2 cut(s)	750, 835
SfaNI	GCATC	4 cut(s)	355, 792, 817, 913
SfcI	CTRYAG	2 cut(s)	105, 974
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	2 cut(s)	213, 482
Sse9I	AATT	7 cut(s)	197, 593, 614, 652, 722, 795, 960
SseBI	AGGCCT	1 cut(s)	833
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	143
SspMI	CTAG	6 cut(s)	284, 467, 542, 729, 788, 822
StuI	AGGCCT	1 cut(s)	833
StyD4I	CCNGG	2 cut(s)	748, 833
StyI	CCWWGG	2 cut(s)	27, 955
TaaI	ACNGT	5 cut(s)	106, 117, 633, 848, 952
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	417
TasI	AATT	7 cut(s)	197, 593, 614, 652, 722, 795, 960
TatI	WGTACW	1 cut(s)	970
TfiI	GAWTC	5 cut(s)	83, 161, 278, 870, 884
Tru1I	TTAA	2 cut(s)	39, 371
Tru9I	TTAA	2 cut(s)	39, 371
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	842, 946
Tsp45I	GTSAC	2 cut(s)	842, 946
TspDTI	ATGAA	6 cut(s)	174, 380, 566, 588, 828, 862
TspGWI	ACGGA	2 cut(s)	114, 830
TspRI	CASTG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	4 cut(s)	593, 614, 795, 960
XceI	RCATGY	2 cut(s)	483, 578
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	6 cut(s)	284, 467, 542, 729, 788, 822
ZrmI	AGTACT	1 cut(s)	972
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.