Rw2G005260

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
4948125 .. 4948481
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G005260.1

Sequence Viewer

Length: 357 bp
ATGGTCATCGGAGGCGCTGCTCCGGCATGGTTTCATCGGGACGCTGCCCGGCATGTTGGCTTTGACATCATTGACACCCGAAGGTGCTGTTGTGAGGAGGGATGCAACAGAAAAGAGAAGGTGGTGGAGAGAAATGGAATGAGGTCTGAACCTTTTGTCTTCCAAGCTGCTTGCTGCTTTCTCCTTCTTGTATTTTTTCCACGCTGCTATGCTCCGTTGCGTCCTCCTGTTGTCCTCTTCACGTTGCGGCGTTGTGTCCCTCCTCCTTTTTGCTCTTCATGTGATGATTATATACTGCCTATAGATGAGTTTGGCTTGTGTACAACATTGAAAGGTTTAGAGTTCAATTTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

8.02

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 247
AfaI GTAC 1 cut(s) 322
AgsI TTSAA 3 cut(s) 331, 346, 352
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApeKI GCWGC 5 cut(s) 17, 44, 167, 174, 204
AspLEI GCGC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 4, 31, 154, 161, 191
BcnI CCSGG 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 6 cut(s) 18, 45, 168, 175, 205, 248
BlsI GCNGC 6 cut(s) 19, 46, 169, 176, 206, 249
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 110, 252
BseXI GCAGC 5 cut(s) 4, 31, 154, 161, 191
BsiSI CCGG 2 cut(s) 23, 49
BslFI GGGAC 2 cut(s) 53, 242
BsmFI GGGAC 2 cut(s) 53, 242
Bsp1407I TGTACA 1 cut(s) 320
BspACI CCGC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 242, 280
BstAUI TGTACA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 5 cut(s) 4, 31, 154, 161, 191
BstV2I GAAGAC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 17
CseI GACGC 2 cut(s) 50, 209
Csp6I GTAC 1 cut(s) 321
CviAII CATG 3 cut(s) 27, 53, 279
CviJI RGCY 3 cut(s) 60, 167, 315
CviKI_1 RGCY 3 cut(s) 60, 167, 315
CviQI GTAC 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 242, 280
EarI CTCTTC 2 cut(s) 242, 280
FaeI CATG 3 cut(s) 30, 56, 282
FaiI YATR 7 cut(s) 28, 54, 210, 280, 291, 293, 302
FaqI GGGAC 2 cut(s) 53, 242
FatI CATG 3 cut(s) 26, 52, 278
Fnu4HI GCNGC 6 cut(s) 18, 45, 168, 175, 205, 248
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 6 cut(s) 18, 45, 168, 175, 205, 248
GlaI GCGC 1 cut(s) 16
GluI GCNGC 6 cut(s) 18, 45, 168, 175, 205, 248
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 2 cut(s) 23, 49
HgaI GACGC 2 cut(s) 50, 209
HhaI GCGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 30, 56, 282
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 2 cut(s) 23, 49
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 2 cut(s) 11, 148
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 3 cut(s) 75, 112, 194
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 3 cut(s) 30, 56, 282
HspAI GCGC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 25, 217
LpnPI CCDG 3 cut(s) 36, 62, 240
Lsp1109I GCAGC 5 cut(s) 4, 31, 154, 161, 191
LweI GCATC 1 cut(s) 92
MaeII ACGT 1 cut(s) 242
MboII GAAGA 3 cut(s) 151, 229, 267
MluCI AATT 1 cut(s) 346
MnlI CCTC 8 cut(s) 5, 88, 91, 135, 234, 245, 270, 273
MspI CCGG 2 cut(s) 23, 49
MspR9I CCNGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 49
NlaIII CATG 3 cut(s) 30, 56, 282
NspI RCATGY 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 280
PkrI GCNGC 6 cut(s) 19, 46, 169, 176, 206, 249
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 280
SatI GCNGC 6 cut(s) 18, 45, 168, 175, 205, 248
ScrFI CCNGG 1 cut(s) 49
SetI ASST 7 cut(s) 86, 123, 146, 154, 169, 245, 337
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 300
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 47
TaiI ACGT 1 cut(s) 245
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 320
TauI GCSGC 1 cut(s) 250
TseI GCWGC 5 cut(s) 17, 44, 167, 174, 204
TspDTI ATGAA 2 cut(s) 23, 267
TspGWI ACGGA 1 cut(s) 204
XceI RCATGY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.