Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

49307713 .. 49311226

Gene Structure 3514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG273200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCAACCTTAACTTGGAAAAAGACGTTTCAGGGGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTATTCTGTAGAAATACAGTTTTTTTCGTTGCTTAGTGAAAAATATTCAGAGAATGGATATGAATCAAAGGAGTTTGAAGCTGGAGGATACAAATGGAAATTGGTGTTTCACCCAAATGGAAACAAAAAAAGGAATGTAAAAGACCACATCTCCCTCTACTTGGCAATAGCTGGAGCAGATTCACTAGATAGTAGTTGGGAAGTATATGTTGATTTCAGATTGTTTCTGCTTGATCAGAATAAGGGAAACTACTTGGTTTTTGAAGAATCATTAGATGCTTTCACAAAGAAGAAATGCTTTCATGGGGCGATGCGTAGTGTGGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTGGACGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAAGACGCAAAGGCGAGTGCCTAGCAAGGATGGAGATAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTAGGTGCTAAATTTTATGACTGTGAACCGTTCACTGCTGGGGACTATAATTGGAAGATAAAGCTTTATCCTGATGGATGTGGGGAAGGCAAGGGTAGTCATCTCTCTCTGTTTTTGGAATTGGCTAGTCCCATAACCCTCCCCCCTGGCTCAGAACTATTTGTGGAGTATAGATTTCGCATCCTAGACCAAATTCGTCATCAGCATCATGAACTTTCTAGTGGTAAGGCCCGGTTCCGTGACGGTACAAGTTTGGGTTCGCGTAGATTCATTGGACAAGAATCTTTCAGGCTGGAAGAAAATGGGTTTTTGAAGAATGATGCTTGCATGGTAGAAGCAGAGGTGACCGTCCATGGAATTTCTAAAGTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

319

Amino Acids

36.32

Weight (kDa)

6.23

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 161	9.6e-34	MATH domain
MATH	PF00917	40 - 163	2.3e-11	MATH domain
MATH_2	PF22486	185 - 310	3.9e-29	MATH domain
MATH	PF00917	191 - 312	2.6e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	847
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	575, 596, 777, 942
AfaI	GTAC	2 cut(s)	832, 954
AfiI	CCNNNNNNNGG	2 cut(s)	16, 232
AflIII	ACRYGT	2 cut(s)	461, 556
AgsI	TTSAA	4 cut(s)	149, 335, 419, 898
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	152, 242, 649
AluI	AGCT	3 cut(s)	152, 242, 649
AoxI	GGCC	2 cut(s)	3, 813
ApoI	RAATTY	4 cut(s)	575, 596, 777, 942
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	51, 173, 940
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	511
BccI	CCATC	2 cut(s)	526, 653
BciT130I	CCWGG	1 cut(s)	732
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	817
BfaI	CTAG	6 cut(s)	257, 449, 524, 711, 770, 804
BfmI	CTRYAG	2 cut(s)	78, 956
BfuI	GTATCC	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	732, 817
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	475, 821
BmrFI	CCNGG	2 cut(s)	732, 817
BmsI	GCATC	5 cut(s)	337, 372, 774, 799, 895
BpiI	GAAGAC	1 cut(s)	511
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	2 cut(s)	174, 264
BpuMI	CCSGG	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	477, 730, 937
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 465, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 232
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	477, 730, 937
BseGI	GGATG	3 cut(s)	537, 668, 765
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	16, 232
BseMII	CTCAG	1 cut(s)	750
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	847
BshFI	GGCC	2 cut(s)	5, 815
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	641, 699
BslI	CCNNNNNNNGG	2 cut(s)	16, 232
BsmFI	GGGAC	2 cut(s)	641, 699
BsnI	GGCC	2 cut(s)	5, 815
Bsp143I	GATC	2 cut(s)	44, 304
Bsp19I	CCATGG	1 cut(s)	937
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	5, 815
BspCNI	CTCAG	1 cut(s)	749
BspFNI	CGCG	1 cut(s)	847
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	475, 821
BssECI	CCNNGG	3 cut(s)	477, 730, 937
BssMI	GATC	2 cut(s)	44, 304
BssT1I	CCWWGG	1 cut(s)	937
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	5 cut(s)	90, 608, 615, 830, 934
BstC8I	GCNNGC	1 cut(s)	910
BstDEI	CTNAG	2 cut(s)	104, 736
BstDSI	CCRYGG	1 cut(s)	937
BstEII	GGTNACC	1 cut(s)	928
BstF5I	GGATG	3 cut(s)	537, 668, 765
BstFNI	CGCG	1 cut(s)	847
BstKTI	GATC	2 cut(s)	47, 307
BstMBI	GATC	2 cut(s)	44, 304
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	2 cut(s)	465, 560
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	2 cut(s)	730, 815
BstSFI	CTRYAG	2 cut(s)	78, 956
BstUI	CGCG	1 cut(s)	847
BstV2I	GAAGAC	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	5, 815
BtgI	CCRYGG	1 cut(s)	937
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	537, 668, 765
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	910
CciI	TCATGA	1 cut(s)	793
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	831, 953
CviAII	CATG	6 cut(s)	374, 462, 557, 794, 913, 938
CviQI	GTAC	2 cut(s)	831, 953
DdeI	CTNAG	2 cut(s)	104, 736
DpnI	GATC	2 cut(s)	46, 306
DpnII	GATC	2 cut(s)	44, 304
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	937
Eco91I	GGTNACC	1 cut(s)	928
EcoO65I	GGTNACC	1 cut(s)	928
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	937
ErhI	CCWWGG	1 cut(s)	937
FaeI	CATG	6 cut(s)	377, 465, 560, 797, 916, 941
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	2 cut(s)	641, 699
FatI	CATG	6 cut(s)	373, 461, 556, 793, 912, 937
FbaI	TGATCA	1 cut(s)	304
FokI	GGATG	3 cut(s)	544, 675, 752
FspBI	CTAG	6 cut(s)	257, 449, 524, 711, 770, 804
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	2 cut(s)	174, 264
HaeIII	GGCC	2 cut(s)	5, 815
HapII	CCGG	1 cut(s)	817
HgaI	GACGC	1 cut(s)	516
Hin1II	CATG	6 cut(s)	377, 465, 560, 797, 916, 941
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	6 cut(s)	56, 134, 251, 338, 852, 866
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	3 cut(s)	51, 173, 940
Hpy166II	GTNNAC	3 cut(s)	454, 611, 618
Hpy188I	TCNGA	5 cut(s)	55, 121, 290, 309, 739
Hpy188III	TCNNGA	3 cut(s)	416, 656, 794
Hpy8I	GTNNAC	3 cut(s)	454, 611, 618
HpyAV	CCTTC	2 cut(s)	559, 665
HpyCH4III	ACNGT	5 cut(s)	90, 608, 615, 830, 934
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	552, 912
HpyF3I	CTNAG	2 cut(s)	104, 736
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	377, 465, 560, 797, 916, 941
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	44, 304
LmnI	GCTCC	2 cut(s)	245, 473
LweI	GCATC	5 cut(s)	337, 372, 774, 799, 895
MaeI	CTAG	6 cut(s)	257, 449, 524, 711, 770, 804
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	824, 928
MalI	GATC	2 cut(s)	46, 306
MboI	GATC	2 cut(s)	44, 304
MboII	GAAGA	8 cut(s)	347, 373, 431, 513, 516, 652, 893, 910
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	170, 575, 596, 634, 704, 777, 942
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	149, 236, 423, 472, 553, 734, 919
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	2 cut(s)	186, 464
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	2 cut(s)	732, 817
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	1 cut(s)	847
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	2 cut(s)	44, 304
NlaIII	CATG	6 cut(s)	377, 465, 560, 797, 916, 941
NlaIV	GGNNCC	2 cut(s)	475, 821
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	2 cut(s)	824, 928
NspI	RCATGY	2 cut(s)	465, 560
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	793
PciI	ACATGT	2 cut(s)	461, 556
PfeI	GAWTC	6 cut(s)	56, 134, 251, 338, 852, 866
PscI	ACATGT	2 cut(s)	461, 556
Psp6I	CCWGG	1 cut(s)	730
PspEI	GGTNACC	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	2 cut(s)	475, 821
PspPI	GGNCC	1 cut(s)	814
RsaI	GTAC	2 cut(s)	832, 954
RsaNI	GTAC	2 cut(s)	831, 953
RseI	CAYNNNNRTG	2 cut(s)	186, 464
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	44, 304
Sau96I	GGNCC	1 cut(s)	814
ScaI	AGTACT	1 cut(s)	954
ScrFI	CCNGG	2 cut(s)	732, 817
SetI	ASST	9 cut(s)	12, 30, 154, 244, 483, 570, 592, 651, 930
SfaNI	GCATC	5 cut(s)	337, 372, 774, 799, 895
SfcI	CTRYAG	2 cut(s)	78, 956
SmiMI	CAYNNNNRTG	2 cut(s)	186, 464
Sse9I	AATT	7 cut(s)	170, 575, 596, 634, 704, 777, 942
SsiI	CCGC	1 cut(s)	62
SspI	AATATT	1 cut(s)	116
SspMI	CTAG	6 cut(s)	257, 449, 524, 711, 770, 804
StyD4I	CCNGG	2 cut(s)	730, 815
StyI	CCWWGG	1 cut(s)	937
TaaI	ACNGT	5 cut(s)	90, 608, 615, 830, 934
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	399
TasI	AATT	7 cut(s)	170, 575, 596, 634, 704, 777, 942
TatI	WGTACW	1 cut(s)	952
TfiI	GAWTC	6 cut(s)	56, 134, 251, 338, 852, 866
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	2 cut(s)	824, 928
Tsp45I	GTSAC	2 cut(s)	824, 928
TspDTI	ATGAA	5 cut(s)	147, 362, 570, 810, 844
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	1 cut(s)	625
XapI	RAATTY	4 cut(s)	575, 596, 777, 942
XceI	RCATGY	2 cut(s)	465, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	6 cut(s)	257, 449, 524, 711, 770, 804
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.