pycom13g12350

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
8562568 .. 8564572
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12350.1

Sequence Viewer

Length: 939 bp
ATGACTAGTCTTAACTTCGATGACCAAGATGGGATTTTGAGAACAATTTCTGATGCACCACCAACTCATTACACGGTAAAAATCCAGTCGGTTTCATTGCTCACCAAAAACTCAGTGGAGAAATATGAATCCGGGGACTTTGAAGCCGGAGGATACAAATGGAAACTGGTTTTCTATCCAAATGGAAACAAGAATAGGAATGTAAAAGAGCACATCTCTCTCTACTTGGTAATGTCAGGATCAAATGCTCTCCAGGTTTCTTCGGAAGTGTATGCTGTTTTCAGGTTGTTTTCGCTCGATCAGAACAACGGGAACTACTTTGTTTTTCAAGAACAAAAGGAAAGGCGCTTTCATGGGATGAAACCTGAATGGGGGTTCGATCAATTTCTCTCGCACAAAGTTTTCAATGAAGCTTCCAATGGATTCCTCATTGATGACACATGTGTGTTCGGAGCGGAGGTCTTTGTTTCTAAAGAAAGCAGGACAGACAAAGGAGAGTGTCTATCGATGGTAAAGGATCCTATTATGTACAAGAATATTTGGAGGATTGACAACTTCTCAAAGCTAGACGGTGAATCCAACGACTCAAAAGTATTCACTGCCGGAGACCATAAATGGAAGATACAGCTATATCCCAAGGGAAAAGGCAATGGAATTGGTACCCATCTGGCTCTTTATCTGGCGTTAGCCGAACCGAAATCTCTTCCTCCTGGCTGTAAAATATATGCAGAGTTTACCCTACGCCTCCTAGACCAGGTGAATGCCAGGCATCAGTATGGTAAAGCAAATTACTGGTTTAGTGCCTCAAATTCGGAGTGGGGATGGTGGAGATTCATTACACTGGGATTATTGAATCAGGCAAGCATGGGGCTTGTGTCGAAGGATACTTGCATCATTGAGGCAGAGGTCACTGTCCATGGAATTACTCGTGCACTGTAG

Protein Analysis

313

Amino Acids

35.47

Weight (kDa)

7.08

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 23 - 154 7.5e-36 MATH domain
MATH PF00917 37 - 156 1.5e-09 MATH domain
MATH_2 PF22486 180 - 303 2.9e-33 MATH domain
MATH PF00917 183 - 305 8e-15 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 455
AciI CCGC 1 cut(s) 455
AclWI GGATC 3 cut(s) 247, 512, 525
AcsI RAATTY 1 cut(s) 808
AfaI GTAC 2 cut(s) 530, 661
AfiI CCNNNNNNNGG 2 cut(s) 371, 754
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 143, 329, 406, 853
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 4 cut(s) 252, 709, 753, 764
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 3 cut(s) 413, 565, 628
AluI AGCT 3 cut(s) 413, 565, 628
Alw21I GWGCWC 2 cut(s) 213, 934
Alw26I GTCTC 1 cut(s) 600
Alw44I GTGCAC 1 cut(s) 930
AlwI GGATC 3 cut(s) 247, 512, 525
ApaLI GTGCAC 1 cut(s) 930
ApoI RAATTY 1 cut(s) 808
Asp700I GAANNNNTTC 1 cut(s) 46
Asp718I GGTACC 1 cut(s) 659
AspLEI GCGC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 94, 584, 769
BaeGI GKGCMC 1 cut(s) 934
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 659
BauI CACGAG 1 cut(s) 927
Bbv12I GWGCWC 2 cut(s) 213, 934
BccI CCATC 4 cut(s) 23, 502, 672, 816
BciT130I CCWGG 4 cut(s) 254, 711, 755, 766
BciVI GTATCC 2 cut(s) 146, 877
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 600
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 566, 749
BfmI CTRYAG 1 cut(s) 935
BfoI RGCGCY 1 cut(s) 349
BfuI GTATCC 2 cut(s) 146, 877
Bme1390I CCNGG 5 cut(s) 133, 254, 711, 755, 766
BmiI GGNNCC 2 cut(s) 519, 661
BmrFI CCNGG 5 cut(s) 133, 254, 711, 755, 766
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 3 cut(s) 43, 778, 900
BmuI ACTGGG 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 132, 636, 916
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 754
Bse1I ACTGG 4 cut(s) 85, 171, 797, 846
Bse3DI GCAATG 2 cut(s) 95, 655
BseBI CCWGG 4 cut(s) 254, 711, 755, 766
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 132, 636, 916
BseGI GGATG 2 cut(s) 363, 827
BseLI CCNNNNNNNGG 2 cut(s) 371, 754
BseMI GCAATG 2 cut(s) 95, 655
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 4 cut(s) 85, 171, 797, 846
BseSI GKGCMC 1 cut(s) 934
BshNI GGYRCC 1 cut(s) 659
BshVI ATCGAT 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 213, 934
BsiSI CCGG 3 cut(s) 132, 147, 603
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 371, 754
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 766
Bso31I GGTCTC 1 cut(s) 600
Bsp1286I GDGCHC 2 cut(s) 213, 934
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 4 cut(s) 239, 298, 379, 517
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 1 cut(s) 455
BspCNI CTCAG 1 cut(s) 125
BspDI ATCGAT 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 519, 661
BspPI GGATC 3 cut(s) 247, 512, 525
BspT107I GGYRCC 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 600
BsrBI CCGCTC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 95, 655
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 4 cut(s) 85, 171, 797, 846
BssECI CCNNGG 3 cut(s) 132, 636, 916
BssMI GATC 4 cut(s) 239, 298, 379, 517
BssSI CACGAG 1 cut(s) 927
BssT1I CCWWGG 2 cut(s) 636, 916
Bst2BI CACGAG 1 cut(s) 927
Bst2UI CCWGG 4 cut(s) 254, 711, 755, 766
Bst4CI ACNGT 4 cut(s) 76, 572, 913, 936
Bst6I CTCTTC 1 cut(s) 708
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 916
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 2 cut(s) 363, 827
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 4 cut(s) 242, 301, 382, 520
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 4 cut(s) 239, 298, 379, 517
BstNI CCWGG 4 cut(s) 254, 711, 755, 766
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 5 cut(s) 131, 252, 709, 753, 764
BstSFI CTRYAG 1 cut(s) 935
BstSLI GKGCMC 1 cut(s) 934
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 506
BsuI GTATCC 2 cut(s) 146, 877
BsuTUI ATCGAT 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 2 cut(s) 363, 827
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 5 cut(s) 120, 597, 839, 909, 932
Cac8I GCNNGC 1 cut(s) 862
CfoI GCGC 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 506
CsiI ACCWGGT 1 cut(s) 753
Csp6I GTAC 2 cut(s) 529, 660
CviAII CATG 4 cut(s) 353, 441, 865, 917
CviJI RGCY 8 cut(s) 146, 413, 565, 628, 671, 689, 714, 871
CviKI_1 RGCY 8 cut(s) 146, 413, 565, 628, 671, 689, 714, 871
CviQI GTAC 2 cut(s) 529, 660
DdeI CTNAG 1 cut(s) 112
DpnI GATC 4 cut(s) 241, 300, 381, 519
DpnII GATC 4 cut(s) 239, 298, 379, 517
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 2 cut(s) 636, 916
Eco31I GGTCTC 1 cut(s) 600
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoRII CCWGG 4 cut(s) 252, 709, 753, 764
EcoT14I CCWWGG 2 cut(s) 636, 916
ErhI CCWWGG 2 cut(s) 636, 916
FaeI CATG 4 cut(s) 356, 444, 868, 920
FaqI GGGAC 1 cut(s) 149
FatI CATG 4 cut(s) 352, 440, 864, 916
FokI GGATG 2 cut(s) 370, 834
FspBI CTAG 3 cut(s) 6, 566, 749
GlaI GCGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 3 cut(s) 132, 147, 603
HhaI GCGC 1 cut(s) 348
Hin1II CATG 4 cut(s) 356, 444, 868, 920
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 6 cut(s) 128, 423, 575, 584, 831, 853
HpaII CCGG 3 cut(s) 132, 147, 603
HphI GGTGA 3 cut(s) 94, 584, 769
Hpy166II GTNNAC 2 cut(s) 735, 932
Hpy188I TCNGA 5 cut(s) 52, 265, 303, 452, 814
Hpy188III TCNNGA 2 cut(s) 237, 329
Hpy8I GTNNAC 2 cut(s) 735, 932
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 4 cut(s) 76, 572, 913, 936
HpyCH4V TGCA 4 cut(s) 56, 728, 891, 932
HpyF3I CTNAG 1 cut(s) 112
Hsp92II CATG 4 cut(s) 356, 444, 868, 920
HspAI GCGC 1 cut(s) 346
KpnI GGTACC 1 cut(s) 663
Kzo9I GATC 4 cut(s) 239, 298, 379, 517
LmnI GCTCC 1 cut(s) 452
LweI GCATC 3 cut(s) 43, 778, 900
MabI ACCWGGT 1 cut(s) 753
MaeI CTAG 3 cut(s) 6, 566, 749
MaeIII GTNAC 1 cut(s) 907
MalI GATC 4 cut(s) 241, 300, 381, 519
MbiI CCGCTC 1 cut(s) 455
MboI GATC 4 cut(s) 239, 298, 379, 517
MboII GAAGA 3 cut(s) 252, 631, 695
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 2 cut(s) 213, 934
MluCI AATT 6 cut(s) 45, 383, 654, 787, 808, 921
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 603
MnlI CCTC 9 cut(s) 143, 437, 451, 537, 717, 755, 814, 892, 898
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 443, 774
MspI CCGG 3 cut(s) 132, 147, 603
MspR9I CCNGG 5 cut(s) 133, 254, 711, 755, 766
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 4 cut(s) 254, 711, 755, 766
NciI CCSGG 1 cut(s) 133
NcoI CCATGG 1 cut(s) 916
NdeII GATC 4 cut(s) 239, 298, 379, 517
NlaIII CATG 4 cut(s) 356, 444, 868, 920
NlaIV GGNNCC 2 cut(s) 519, 661
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 1 cut(s) 444
OliI CACNNNNGTG 1 cut(s) 443
PciI ACATGT 1 cut(s) 440
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 5 cut(s) 128, 423, 575, 831, 853
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
PscI ACATGT 1 cut(s) 440
Psp6I CCWGG 4 cut(s) 252, 709, 753, 764
PspGI CCWGG 4 cut(s) 252, 709, 753, 764
PspN4I GGNNCC 2 cut(s) 519, 661
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 2 cut(s) 530, 661
RsaNI GTAC 2 cut(s) 529, 660
RseI CAYNNNNRTG 2 cut(s) 443, 774
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 4 cut(s) 239, 298, 379, 517
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 133, 254, 711, 755, 766
SduI GDGCHC 2 cut(s) 213, 934
SetI ASST 9 cut(s) 258, 287, 367, 415, 462, 567, 630, 759, 909
SexAI ACCWGGT 1 cut(s) 753
SfaNI GCATC 3 cut(s) 43, 778, 900
SfcI CTRYAG 1 cut(s) 935
SmiMI CAYNNNNRTG 2 cut(s) 443, 774
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 6 cut(s) 45, 383, 654, 787, 808, 921
SsiI CCGC 1 cut(s) 455
SspI AATATT 1 cut(s) 538
SspMI CTAG 3 cut(s) 6, 566, 749
StyD4I CCNGG 5 cut(s) 131, 252, 709, 753, 764
StyI CCWWGG 2 cut(s) 636, 916
TaaI ACNGT 4 cut(s) 76, 572, 913, 936
TaqI TCGA 5 cut(s) 18, 297, 378, 506, 878
TasI AATT 6 cut(s) 45, 383, 654, 787, 808, 921
TatI WGTACW 1 cut(s) 528
TfiI GAWTC 5 cut(s) 128, 423, 575, 831, 853
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 5 cut(s) 120, 604, 846, 916, 939
TseFI GTSAC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 6 cut(s) 84, 141, 341, 374, 423, 823
TspRI CASTG 5 cut(s) 120, 604, 846, 916, 939
VneI GTGCAC 1 cut(s) 930
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 3 cut(s) 6, 566, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.