Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

10624662 .. 10627001

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1138600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACGAGTCTCAACTTCGATGACCAAGATGGGATACTGAGAACTATTTCGGATGCACCACCAACCCATTACACAGTAAAAGTACAATCGATTTCGTTGCTCACCAAACATAACATGGAGAAATATGAATCTGGGGACTTTGAAGCCGGAGGATACAAATGGAAACTGGTTTTCTATCCGAATGGAAACAAGAGCAGGAATGTGAAAGAGCACATCTCTCTCTACTTGGTAATGTCTAGGGCAACTGCTCCCCAGACTTCTTCGGAAGTGTCTGCTGTTTTCAGGTTGTTTATACTCGATCAGAACAACGGCAATTACTTCGTTCTTCAAGAACCAAAGGAAAGGCGGTTTCATGGGATGAAACTCGATTGGGGATTCGATCAATTTCTCTCCCACAAAGCTTTCACTCAAGCTTCAAATGGATTTCTCATAGATGACACTTGTGTGTTGGGAGCAGAGGTCTTTGTTTCTAAAGAGAGAAGCGAAGGCAAAGGAGAACGTCTATCAATGGTAAAGGATCCTGTTATGTACAAGAATACTTGGAGGATTGACAACGTATCAAAGCTAGATGCGGAATCCTACGACTCAAAAACATTCATTGCTGGAGACCAGAAATGGAAGATGCAGCTCTATCCCAAGGGAAAGGGCAATGGAGTTGGAACCCATCTTGCTTTTTTTCTGGCGTTAGCTGAACCGAAATCTCTTCCTCCTGGCTATAAAATATATGCAGAGTTTACCCTGCGGATCCTAGATCAGAAGTGGGGCGAGTATCATCTCTCCAGTAAAGCAAATCACTGGTTCAGTGCCTCAAATTCGGTGAGGGGATGGATGAGATTTATTACTCTGGGATCATTCAACCAGGCATACATTGTGTTGAATGATACTTGCATTGTGGAGGCAGACGTCGCTATCCATGGAATTACTGATGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

312

Amino Acids

35.33

Weight (kDa)

7.75

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 154	1.8e-35	MATH domain
MATH	PF00917	37 - 156	1.2e-08	MATH domain
MATH_2	PF22486	180 - 302	3.4e-30	MATH domain
MATH	PF00917	183 - 304	3e-15	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	906
AciI	CCGC	3 cut(s)	346, 572, 742
AclWI	GGATC	5 cut(s)	512, 525, 739, 752, 856
AcsI	RAATTY	1 cut(s)	811
AcyI	GRCGYC	1 cut(s)	903
AfaI	GTAC	2 cut(s)	84, 530
AgsI	TTSAA	5 cut(s)	143, 329, 417, 856, 877
AjnI	CCWGG	2 cut(s)	709, 858
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	5 cut(s)	401, 413, 565, 628, 689
AluI	AGCT	5 cut(s)	401, 413, 565, 628, 689
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	14, 600
AlwI	GGATC	5 cut(s)	512, 525, 739, 752, 856
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	94, 829
BamHI	GGATCC	2 cut(s)	517, 744
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	3 cut(s)	23, 672, 819
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 301, 335
BciT130I	CCWGG	2 cut(s)	711, 860
BciVI	GTATCC	2 cut(s)	27, 146
BcoDI	GTCTC	2 cut(s)	14, 600
BfaI	CTAG	3 cut(s)	237, 566, 749
BfmI	CTRYAG	1 cut(s)	932
BfuI	GTATCC	2 cut(s)	27, 146
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	2 cut(s)	711, 860
BmiI	GGNNCC	3 cut(s)	519, 661, 746
BmrFI	CCNGG	2 cut(s)	711, 860
BmsI	GCATC	4 cut(s)	43, 559, 612, 916
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	2 cut(s)	624, 763
BpuEI	CTTGAG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	636, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse1I	ACTGG	3 cut(s)	171, 780, 800
Bse3DI	GCAATG	2 cut(s)	597, 655
BseBI	CCWGG	2 cut(s)	711, 860
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	636, 913
BseGI	GGATG	4 cut(s)	58, 363, 830, 834
BseMI	GCAATG	2 cut(s)	597, 655
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	171, 780, 800
BseXI	GCAGC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	14, 600
BsmFI	GGGAC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
Bsp19I	CCATGG	1 cut(s)	913
BspACI	CCGC	3 cut(s)	346, 572, 742
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	519, 661, 746
BspPI	GGATC	5 cut(s)	512, 525, 739, 752, 856
BspTNI	GGTCTC	1 cut(s)	600
BsrDI	GCAATG	2 cut(s)	597, 655
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	171, 780, 800
BssECI	CCNNGG	2 cut(s)	636, 913
BssMI	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
BssNI	GRCGYC	1 cut(s)	903
BssT1I	CCWWGG	2 cut(s)	636, 913
Bst2UI	CCWGG	2 cut(s)	711, 860
Bst4CI	ACNGT	2 cut(s)	76, 933
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	903
BstAUI	TGTACA	1 cut(s)	528
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	913
BstF5I	GGATG	4 cut(s)	58, 363, 830, 834
BstKTI	GATC	6 cut(s)	301, 382, 520, 747, 754, 851
BstMAI	GTCTC	2 cut(s)	14, 600
BstMBI	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNI	CCWGG	2 cut(s)	711, 860
BstSCI	CCNGG	2 cut(s)	709, 858
BstSFI	CTRYAG	1 cut(s)	932
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	2 cut(s)	517, 744
BstYI	RGATCY	2 cut(s)	517, 744
Bsu15I	ATCGAT	1 cut(s)	89
BsuI	GTATCC	2 cut(s)	27, 146
BsuTUI	ATCGAT	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	913
BtsCI	GGATG	4 cut(s)	58, 363, 830, 834
BtsIMutI	CAGTG	3 cut(s)	793, 808, 929
ClaI	ATCGAT	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	83, 529
CviAII	CATG	3 cut(s)	115, 353, 914
CviJI	RGCY	7 cut(s)	146, 401, 413, 565, 628, 689, 714
CviKI_1	RGCY	7 cut(s)	146, 401, 413, 565, 628, 689, 714
CviQI	GTAC	2 cut(s)	83, 529
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	6 cut(s)	300, 381, 519, 746, 753, 850
DpnII	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	2 cut(s)	636, 913
Eco31I	GGTCTC	1 cut(s)	600
EcoRII	CCWGG	2 cut(s)	709, 858
EcoT14I	CCWWGG	2 cut(s)	636, 913
ErhI	CCWWGG	2 cut(s)	636, 913
FaeI	CATG	3 cut(s)	118, 356, 917
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	3 cut(s)	114, 352, 913
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	4 cut(s)	65, 370, 837, 841
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	3 cut(s)	237, 566, 749
GluI	GCNGC	1 cut(s)	626
GsuI	CTGGAG	2 cut(s)	624, 763
HapII	CCGG	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	903
Hin1II	CATG	3 cut(s)	118, 356, 917
HindIII	AAGCTT	2 cut(s)	399, 411
HinfI	GANTC	5 cut(s)	7, 128, 375, 575, 584
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	2 cut(s)	94, 829
Hpy166II	GTNNAC	1 cut(s)	735
Hpy188I	TCNGA	5 cut(s)	52, 180, 265, 303, 756
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	735
Hpy99I	CGWCG	1 cut(s)	908
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	2 cut(s)	76, 933
HpyCH4IV	ACGT	3 cut(s)	499, 555, 903
HpyCH4V	TGCA	5 cut(s)	56, 625, 728, 888, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	3 cut(s)	499, 555, 903
Hsp92I	GRCGYC	1 cut(s)	903
Hsp92II	CATG	3 cut(s)	118, 356, 917
Kzo9I	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
LmnI	GCTCC	2 cut(s)	253, 452
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	4 cut(s)	43, 559, 612, 916
MaeI	CTAG	3 cut(s)	237, 566, 749
MaeII	ACGT	3 cut(s)	499, 555, 903
MalI	GATC	6 cut(s)	300, 381, 519, 746, 753, 850
MboI	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
MboII	GAAGA	4 cut(s)	252, 317, 631, 695
MflI	RGATCY	2 cut(s)	517, 744
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	313, 383, 811, 918
MlyI	GAGTC	2 cut(s)	16, 578
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	7 cut(s)	143, 451, 537, 717, 813, 817, 889
MroXI	GAANNNNTTC	1 cut(s)	46
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	711, 860
MvaI	CCWGG	2 cut(s)	711, 860
MwoI	GCNNNNNNNGC	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	913
NdeII	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
NlaIII	CATG	3 cut(s)	118, 356, 917
NlaIV	GGNNCC	3 cut(s)	519, 661, 746
OliI	CACNNNNGTG	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	128, 375, 575
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	2 cut(s)	15, 578
PpsI	GAGTC	2 cut(s)	15, 578
Psp6I	CCWGG	2 cut(s)	709, 858
PspGI	CCWGG	2 cut(s)	709, 858
PspN4I	GGNNCC	3 cut(s)	519, 661, 746
PsuI	RGATCY	2 cut(s)	517, 744
RsaI	GTAC	2 cut(s)	84, 530
RsaNI	GTAC	2 cut(s)	83, 529
RseI	CAYNNNNRTG	1 cut(s)	443
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	6 cut(s)	298, 379, 517, 744, 751, 848
SchI	GAGTC	2 cut(s)	16, 578
ScrFI	CCNGG	2 cut(s)	711, 860
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	43, 559, 612, 916
SfcI	CTRYAG	1 cut(s)	932
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	313, 383, 811, 918
SsiI	CCGC	3 cut(s)	346, 572, 742
SspMI	CTAG	3 cut(s)	237, 566, 749
StyD4I	CCNGG	2 cut(s)	709, 858
StyI	CCWWGG	2 cut(s)	636, 913
TaaI	ACNGT	2 cut(s)	76, 933
TaiI	ACGT	3 cut(s)	502, 558, 906
TaqI	TCGA	5 cut(s)	18, 89, 297, 366, 378
TasI	AATT	4 cut(s)	313, 383, 811, 918
TatI	WGTACW	2 cut(s)	82, 528
TfiI	GAWTC	3 cut(s)	128, 375, 575
TscAI	CASTG	3 cut(s)	800, 808, 936
TseI	GCWGC	1 cut(s)	625
TspDTI	ATGAA	4 cut(s)	141, 341, 374, 586
TspRI	CASTG	3 cut(s)	800, 808, 936
XapI	RAATTY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	46
XspI	CTAG	3 cut(s)	237, 566, 749
ZraI	GACGTC	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.