Rh4AG279600

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
59543054 .. 59547641
4588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG279600.1

Sequence Viewer

Length: 1062 bp
ATGGCTATCCTTAACTCGGACCAAGATGGCGTTTTCAGATCACTTTCAGATTCACTCCCAACTCATTGCACTCTAAATATAGAGTCGTTTTCGTTGCTAGCTGAATATCATGGAGTCAATGGATATGAATCAAAAGAGTTCGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTACAAAGCAGAAGTGCTTTCACGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATCCGTCTTAAAGAATTTACTGATGTTTCCAATGGATATCTCATCGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACAGGCCAGGCAGAGTGTATATCAAGGATAAAGAGCCCTTGTATGTACAAGCATGTTTGGAAACTTGAAAAATTTTCAAAGTTGAACGCTCAGTTCTACCACTCAAAACAATTCAGTGCTGAAGGACTAAACTGGGCTATAGTACTCTATCCCAAGAGGAAAAGCACCACAAACGATCCTTCTCATCTGTCTGTTTACTTGCAATGGGTTGCTGAAAAAACAAGTCATGTCACCAAAGTATTTACAGAGTATGCCTTACGCATTGTAGATCGAAATCATGCCAGCATTCAATATCGCTCAGATAAGATATGTTTCATCACTGCCGGTGAGCATTATGGTTGGAGTAAATTCATTCCACGGGCTGATTTACGTCGTTTTTTGAAGAACGATACTTTCTCAGTGGAAGCAGAGATCACTGTTCTTGGGATTGCTAAAGAACCCTCAGAGGCAGAGGACATTGTCCATACAACTGGGGAGGACAGTTCATGCAGGTTCCCCTTCAATTCGTCTTTACTTCTCATGTCCTTGTCCACCTTCGTCATTGTGCTCAATCTACCTCGGTTGGCCAGGTAG

Protein Analysis

353

Amino Acids

40.3

Weight (kDa)

7.62

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 22 - 156 7.5e-31 MATH domain
MATH PF00917 39 - 158 9.2e-12 MATH domain
MATH_2 PF22486 180 - 301 3.2e-23 MATH domain
MATH PF00917 187 - 303 1.4e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 969
AccI GTMKAC 1 cut(s) 222
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 3 cut(s) 407, 560, 836
AcuI CTGAAG 2 cut(s) 236, 630
AfaI GTAC 4 cut(s) 176, 317, 536, 633
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 7 cut(s) 329, 557, 567, 574, 779, 871, 991
AjnI CCWGG 2 cut(s) 495, 1055
AluBI AGCT 3 cut(s) 101, 391, 461
AluI AGCT 3 cut(s) 101, 391, 461
Alw21I GWGCWC 1 cut(s) 1038
AlwI GGATC 1 cut(s) 659
AoxI GGCC 2 cut(s) 493, 1053
ApoI RAATTY 3 cut(s) 407, 560, 836
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 712, 827
AsuII TTCGAA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 19
BalI TGGCCA 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 1038
BbvCI CCTCAGC 1 cut(s) 462
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 497, 1057
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 298
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 969
BfuI GTATCC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 2 cut(s) 497, 1057
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 983
BmrFI CCNGG 2 cut(s) 497, 1057
BmrI ACTGGG 2 cut(s) 631, 969
BmsI GCATC 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 101
BmuI ACTGGG 2 cut(s) 631, 969
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 438
BsaBI GATNNNNATC 2 cut(s) 127, 762
BsaJI CCNNGG 2 cut(s) 845, 1046
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 450, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 812
Bse1I ACTGG 4 cut(s) 171, 262, 626, 964
Bse3DI GCAATG 2 cut(s) 64, 698
Bse8I GATNNNNATC 2 cut(s) 127, 762
BseBI CCWGG 2 cut(s) 497, 1057
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 2 cut(s) 845, 1046
BseJI GATNNNNATC 2 cut(s) 127, 762
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 64, 698
BseMII CTCAG 5 cut(s) 453, 593, 801, 900, 945
BseNI ACTGG 4 cut(s) 171, 262, 626, 964
BshFI GGCC 2 cut(s) 495, 1055
BshVI ATCGAT 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 1038
BsiSI CCGG 3 cut(s) 147, 237, 813
BslI CCNNNNNNNGG 1 cut(s) 16
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 2 cut(s) 495, 1055
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 527, 1038
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 5 cut(s) 38, 298, 664, 757, 900
BspANI GGCC 2 cut(s) 495, 1055
BspCNI CTCAG 5 cut(s) 454, 592, 800, 899, 944
BspDI ATCGAT 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 983
BspMI ACCTGC 1 cut(s) 969
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 64, 698
BsrFI RCCGGY 1 cut(s) 812
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 4 cut(s) 171, 262, 626, 964
BssAI RCCGGY 1 cut(s) 812
BssECI CCNNGG 2 cut(s) 845, 1046
BssMI GATC 5 cut(s) 38, 298, 664, 757, 900
Bst2UI CCWGG 2 cut(s) 497, 1057
Bst4CI ACNGT 2 cut(s) 907, 971
BstAUI TGTACA 1 cut(s) 534
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 99, 772
BstDEI CTNAG 5 cut(s) 462, 579, 787, 886, 931
BstDSI CCRYGG 1 cut(s) 845
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 5 cut(s) 41, 301, 667, 760, 903
BstMBI GATC 5 cut(s) 38, 298, 664, 757, 900
BstNI CCWGG 2 cut(s) 497, 1057
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 495, 1055
BstSFI CTRYAG 1 cut(s) 627
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 959
Bsu15I ATCGAT 1 cut(s) 438
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 495, 1055
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 845
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 4 cut(s) 610, 807, 894, 903
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 2 cut(s) 99, 772
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 812
Cfr13I GGNCC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 438
Csp6I GTAC 4 cut(s) 175, 316, 535, 632
CviAII CATG 7 cut(s) 110, 374, 542, 716, 767, 975, 1009
CviQI GTAC 4 cut(s) 175, 316, 535, 632
DdeI CTNAG 5 cut(s) 462, 579, 787, 886, 931
DpnI GATC 5 cut(s) 40, 300, 666, 759, 902
DpnII GATC 5 cut(s) 38, 298, 664, 757, 900
EaeI YGGCCR 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 236, 630
EcoRII CCWGG 2 cut(s) 495, 1055
EcoRV GATATC 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 527
FaeI CATG 7 cut(s) 113, 377, 545, 719, 770, 978, 1012
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 7 cut(s) 109, 373, 541, 715, 766, 974, 1008
FauNDI CATATG 1 cut(s) 158
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 527
FspBI CTAG 1 cut(s) 98
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
HaeIII GGCC 2 cut(s) 495, 1055
HapII CCGG 3 cut(s) 147, 237, 813
HhaI GCGC 1 cut(s) 231
Hin1II CATG 7 cut(s) 113, 377, 545, 719, 770, 978, 1012
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 5 cut(s) 50, 83, 114, 128, 245
HpaII CCGG 3 cut(s) 147, 237, 813
HphI GGTGA 2 cut(s) 712, 827
Hpy166II GTNNAC 3 cut(s) 223, 685, 1020
Hpy188I TCNGA 7 cut(s) 19, 38, 49, 255, 303, 790, 934
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 3 cut(s) 223, 685, 1020
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 4 cut(s) 605, 678, 997, 1033
HpyCH4III ACNGT 2 cut(s) 907, 971
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 4 cut(s) 69, 477, 691, 978
HpyF3I CTNAG 5 cut(s) 462, 579, 787, 886, 931
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 7 cut(s) 113, 377, 545, 719, 770, 978, 1012
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 38, 298, 664, 757, 900
LmnI GCTCC 1 cut(s) 458
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 1 cut(s) 718
MalI GATC 5 cut(s) 40, 300, 666, 759, 902
MboI GATC 5 cut(s) 38, 298, 664, 757, 900
MboII GAAGA 6 cut(s) 205, 208, 218, 254, 341, 883
MhlI GDGCHC 2 cut(s) 527, 1038
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 5 cut(s) 407, 560, 599, 836, 991
MluNI TGGCCA 1 cut(s) 1055
MlyI GAGTC 2 cut(s) 92, 123
MmeI TCCRAC 1 cut(s) 809
MnlI CCTC 8 cut(s) 143, 457, 639, 928, 934, 940, 958, 1056
Mox20I TGGCCA 1 cut(s) 1055
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 2 cut(s) 12, 402
Msp20I TGGCCA 1 cut(s) 1055
MspI CCGG 3 cut(s) 147, 237, 813
MspR9I CCNGG 2 cut(s) 497, 1057
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 2 cut(s) 497, 1057
NdeI CATATG 1 cut(s) 158
NdeII GATC 5 cut(s) 38, 298, 664, 757, 900
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 7 cut(s) 113, 377, 545, 719, 770, 978, 1012
NlaIV GGNNCC 1 cut(s) 983
NmuCI GTSAC 1 cut(s) 718
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 545
NspV TTCGAA 1 cut(s) 141
PctI GAATGC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 50, 128, 245
PflFI GACNNNGTC 1 cut(s) 947
PleI GAGTC 2 cut(s) 91, 122
PpsI GAGTC 2 cut(s) 91, 122
Psp6I CCWGG 2 cut(s) 495, 1055
PspGI CCWGG 2 cut(s) 495, 1055
PspN4I GGNNCC 1 cut(s) 983
PspPI GGNCC 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 947
RsaI GTAC 4 cut(s) 176, 317, 536, 633
RsaNI GTAC 4 cut(s) 175, 316, 535, 632
SaqAI TTAA 2 cut(s) 12, 402
Sau3AI GATC 5 cut(s) 38, 298, 664, 757, 900
Sau96I GGNCC 1 cut(s) 19
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 2 cut(s) 92, 123
ScrFI CCNGG 2 cut(s) 497, 1057
SduI GDGCHC 2 cut(s) 527, 1038
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 627
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 19
Sse9I AATT 5 cut(s) 407, 560, 599, 836, 991
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 495, 1055
TaaI ACNGT 2 cut(s) 907, 971
TaiI ACGT 1 cut(s) 862
TaqI TCGA 3 cut(s) 141, 438, 760
TasI AATT 5 cut(s) 407, 560, 599, 836, 991
TatI WGTACW 3 cut(s) 315, 534, 631
TfiI GAWTC 3 cut(s) 50, 128, 245
Tru1I TTAA 2 cut(s) 12, 402
Tru9I TTAA 2 cut(s) 12, 402
TscAI CASTG 4 cut(s) 610, 814, 894, 910
TseFI GTSAC 1 cut(s) 718
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 5 cut(s) 141, 362, 793, 829, 963
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 4 cut(s) 610, 814, 894, 910
Tth111I GACNNNGTC 1 cut(s) 947
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 3 cut(s) 407, 560, 836
XceI RCATGY 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.