Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

24268276 .. 24271087

Gene Structure 2812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGCAGCAGTAACTTTGAAAACGAAGGAATATTGAAATCAACTTCAGATTCACCGCCGACTCACTATACTGTAAAAACAGAGTTATTTTCGATGGTAACCGAACTTTTTACACAAGATGGATATGAATCATCACAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTGTTGTACCCAAAGGGAAACAAGAAGAGGAATGTGAGAGACCACATCTCTCTCTACTTGGTCATAGCTGAAACAAATTCACTTCCAACTGGTTGGGAGGTAAATGTTGATTTCAGATTGTTTTTGTTCGATCAGAATAAGAGAGTCTACTCGGTTTTTGAAGATGCTTTTGCTAAGGGGAAGTGCTTCAACGGTGCTGTGCTTGATGCGGTTGGTTTTGATAGATTTATCCCCATTAAAGACTTTACTGATGCCTCCAATGGATATCTTGTTGATGATACATGTGTGTATGGAGCTGAGGTCTTCGTTTGTAAAGAAAGGAGAACAGGGAAGGGAGAGTGTCTAAGAAAGATAAGAACTGCTTCAGTGTACAAACATGTCTGGAAGCTTGACAACTTCAAAAAATTAGATGCTGAACACTATTATTCAGAATCCTTTAATACTGGAGGCTATGAATGGAAGATAAAGCTCTATCCCAAGGGAATTGCTGATGGAAAGGGTAGTCATCTCTCTATGTTTCTCACATTGGCTAATCCTCAGACCCTTCCTTCTGGATCTCGAATATTTGCAGATTTTACATTGCGCATCCTAGATCAAATTCAAATTCATTCCACGCATCACTCACTAAGTGGTACTAATGGTAGGATCTTCAGTGCCTTGAATAAGAGTTGGGGTTATAATAAATTCATCACGGTGGAAATGTTCAGGAAGAAAGAAAATGGTTTTTTGTTGAAAGACAGTTGCATAGTGGAGGCAGAGGTCACTGTTCGTGCAATTACTGGAGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

320

Amino Acids

36.21

Weight (kDa)

8.61

Isoelectric Point (pI)

21.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 157	1.5e-31	MATH domain
MATH	PF00917	36 - 159	4.9e-12	MATH domain
MATH_2	PF22486	181 - 310	7.6e-35	MATH domain
MATH	PF00917	187 - 312	3.4e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc16I	TGCGCA	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	56, 377
AclWI	GGATC	2 cut(s)	730, 821
AcsI	RAATTY	4 cut(s)	244, 765, 771, 851
AcuI	CTGAAG	3 cut(s)	30, 516, 802
AdeI	CACNNNGTG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	176, 539, 802
AflIII	ACRYGT	2 cut(s)	449, 544
AgsI	TTSAA	9 cut(s)	20, 37, 143, 329, 358, 568, 770, 829, 901
AluBI	AGCT	5 cut(s)	146, 236, 464, 556, 637
AluI	AGCT	5 cut(s)	146, 236, 464, 556, 637
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	730, 821
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	4 cut(s)	244, 765, 771, 851
Asp700I	GAANNNNTTC	2 cut(s)	353, 529
AspLEI	GCGC	1 cut(s)	753
AsuHPI	GGTGA	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BbsI	GAAGAC	1 cut(s)	463
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	88, 113, 653
BciVI	GTATCC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	956
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
BmsI	GCATC	6 cut(s)	322, 364, 409, 568, 762, 793
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	2 cut(s)	168, 633
Bpu10I	CCTNAGC	2 cut(s)	342, 465
BsaBI	GATNNNNATC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse1I	ACTGG	4 cut(s)	171, 262, 616, 952
Bse3DI	GCAATG	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	1 cut(s)	753
BseJI	GATNNNNATC	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	746
BseMII	CTCAG	2 cut(s)	456, 719
BseNI	ACTGG	4 cut(s)	171, 262, 616, 952
BseXI	GCAGC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	298, 722, 760, 813
BspACI	CCGC	2 cut(s)	56, 377
BspCNI	CTCAG	2 cut(s)	457, 718
BspPI	GGATC	2 cut(s)	730, 821
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	746
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	4 cut(s)	171, 262, 616, 952
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	4 cut(s)	298, 722, 760, 813
BssT1I	CCWWGG	1 cut(s)	645
Bst4CI	ACNGT	6 cut(s)	73, 138, 362, 862, 908, 934
Bst6I	CTCTTC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	537
BstDEI	CTNAG	5 cut(s)	342, 465, 512, 705, 794
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	753
BstKTI	GATC	4 cut(s)	301, 725, 763, 816
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	4 cut(s)	298, 722, 760, 813
BstNSI	RCATGY	2 cut(s)	453, 548
BstPI	GGTNACC	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	956
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	722, 813
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	2 cut(s)	722, 813
BsuI	GTATCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	540, 826, 930
CfoI	GCGC	1 cut(s)	753
Csp6I	GTAC	3 cut(s)	175, 538, 801
CviAII	CATG	2 cut(s)	450, 545
CviJI	RGCY	7 cut(s)	146, 236, 464, 556, 618, 637, 698
CviKI_1	RGCY	7 cut(s)	146, 236, 464, 556, 618, 637, 698
CviQI	GTAC	3 cut(s)	175, 538, 801
DdeI	CTNAG	5 cut(s)	342, 465, 512, 705, 794
DpnI	GATC	4 cut(s)	300, 724, 762, 815
DpnII	GATC	4 cut(s)	298, 722, 760, 813
DraIII	CACNNNGTG	1 cut(s)	797
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	434
Eco57I	CTGAAG	3 cut(s)	30, 516, 802
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	2 cut(s)	453, 548
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FatI	CATG	2 cut(s)	449, 544
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	758
FspI	TGCGCA	1 cut(s)	752
GlaI	GCGC	1 cut(s)	752
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	2 cut(s)	168, 633
HhaI	GCGC	1 cut(s)	753
Hin1II	CATG	2 cut(s)	453, 548
Hin6I	GCGC	1 cut(s)	751
HinP1I	GCGC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	5 cut(s)	50, 61, 128, 312, 599
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	316, 538
Hpy188I	TCNGA	5 cut(s)	49, 284, 303, 598, 708
Hpy188III	TCNNGA	4 cut(s)	550, 720, 726, 874
Hpy8I	GTNNAC	2 cut(s)	316, 538
HpyAV	CCTTC	4 cut(s)	20, 493, 722, 726
HpyCH4III	ACNGT	6 cut(s)	73, 138, 362, 862, 908, 934
HpyCH4V	TGCA	3 cut(s)	737, 912, 941
HpyF3I	CTNAG	5 cut(s)	342, 465, 512, 705, 794
Hsp92II	CATG	2 cut(s)	453, 548
HspAI	GCGC	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	298, 722, 760, 813
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	9 cut(s)	132, 152, 243, 480, 535, 597, 705, 859, 933
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	6 cut(s)	322, 364, 409, 568, 762, 793
MaeI	CTAG	1 cut(s)	758
MaeIII	GTNAC	3 cut(s)	11, 97, 928
MalI	GATC	4 cut(s)	300, 724, 762, 815
MboI	GATC	4 cut(s)	298, 722, 760, 813
MboII	GAAGA	6 cut(s)	205, 341, 463, 640, 808, 889
MflI	RGATCY	2 cut(s)	722, 813
MluCI	AATT	7 cut(s)	244, 572, 651, 765, 771, 851, 942
MlyI	GAGTC	2 cut(s)	55, 321
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	9 cut(s)	143, 189, 259, 433, 460, 608, 714, 913, 919
MroXI	GAANNNNTTC	2 cut(s)	353, 529
MseI	TTAA	2 cut(s)	405, 606
MslI	CAYNNNNRTG	1 cut(s)	860
NdeII	GATC	4 cut(s)	298, 722, 760, 813
NlaIII	CATG	2 cut(s)	453, 548
NmuCI	GTSAC	1 cut(s)	928
NsbI	TGCGCA	1 cut(s)	752
NspI	RCATGY	2 cut(s)	453, 548
PciI	ACATGT	2 cut(s)	449, 544
PdmI	GAANNNNTTC	2 cut(s)	353, 529
PfeI	GAWTC	3 cut(s)	50, 128, 599
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	2 cut(s)	55, 320
PpsI	GAGTC	2 cut(s)	55, 320
PscI	ACATGT	2 cut(s)	449, 544
PsiI	TTATAA	1 cut(s)	846
PspEI	GGTNACC	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	722, 813
RsaI	GTAC	3 cut(s)	176, 539, 802
RsaNI	GTAC	3 cut(s)	175, 538, 801
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	2 cut(s)	405, 606
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	4 cut(s)	298, 722, 760, 813
SchI	GAGTC	2 cut(s)	55, 321
SetI	ASST	8 cut(s)	148, 238, 270, 466, 471, 558, 639, 930
SfaNI	GCATC	6 cut(s)	322, 364, 409, 568, 762, 793
SfcI	CTRYAG	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	860
Sse9I	AATT	7 cut(s)	244, 572, 651, 765, 771, 851, 942
SsiI	CCGC	2 cut(s)	56, 377
SspI	AATATT	2 cut(s)	33, 732
SspMI	CTAG	1 cut(s)	758
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	6 cut(s)	73, 138, 362, 862, 908, 934
TaqI	TCGA	3 cut(s)	92, 297, 727
TasI	AATT	7 cut(s)	244, 572, 651, 765, 771, 851, 942
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	3 cut(s)	50, 128, 599
Tru1I	TTAA	2 cut(s)	405, 606
Tru9I	TTAA	2 cut(s)	405, 606
TscAI	CASTG	3 cut(s)	540, 826, 937
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	4 cut(s)	141, 636, 764, 844
TspRI	CASTG	3 cut(s)	540, 826, 937
XapI	RAATTY	4 cut(s)	244, 765, 771, 851
XceI	RCATGY	2 cut(s)	453, 548
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	2 cut(s)	353, 529
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.