Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

24909979 .. 24918003

Gene Structure 8025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCATCTTCGAGTAGGACGAAGCGAGTGGAAAGATTGTTTGGAGGGACTAAATGTAATCGTATTTTTTTGCGTGGAGATGAATTGGATCAAGTTGATTCAAAGAGATGGAAAAGAATGTTTGAGCAACAAGTTCCTGAAAGGTCAAATGCCGTTGCGAATGAAGATTCATTTGTTACCCTAGAAGCTCAATGCTCGCAATCATTTGGTCAGGCATCATATCAGAGAAGCAAGCGAGAGTTTAGAATCATCTCATCAGATGTCAATGAAGTTTGCAGCAAAGAGCAAAAAACAACAATAGCACCTGAACATGTGCTCAAGGCTTTACAGGCGGCAATACAATTCGAATACCTCGAAGACAGGAGTGATTCTACTCATCATCAATCTACTCATTATAAACGCCCTCATTCCAATAACAGCATTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

142

Amino Acids

16.47

Weight (kDa)

9.1

Isoelectric Point (pI)

66.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	276
AsuII	TTCGAA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	277, 333
BlsI	GCNGC	2 cut(s)	278, 334
BmsI	GCATC	2 cut(s)	14, 224
BpiI	GAAGAC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	420
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	345
BssMI	GATC	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	197, 233
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	197, 233
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	2 cut(s)	188, 323
CviKI_1	RGCY	2 cut(s)	188, 323
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	220, 312, 396
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	310
Fnu4HI	GCNGC	2 cut(s)	277, 333
Fsp4HI	GCNGC	2 cut(s)	277, 333
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	2 cut(s)	277, 333
Hin1II	CATG	1 cut(s)	314
HinfI	GANTC	4 cut(s)	98, 167, 246, 368
Hpy188I	TCNGA	2 cut(s)	225, 259
Hpy188III	TCNNGA	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	88
LpnPI	CCDG	5 cut(s)	150, 197, 314, 318, 346
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	14, 224
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	176, 368
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	83, 341
MnlI	CCTC	3 cut(s)	38, 362, 414
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	314
NspI	RCATGY	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 351
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	98, 167, 246, 368
PkrI	GCNGC	2 cut(s)	278, 334
PscI	ACATGT	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	277, 333
Sau3AI	GATC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	4 cut(s)	146, 190, 307, 354
SfaNI	GCATC	2 cut(s)	14, 224
SfuI	TTCGAA	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	83, 341
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	182
TaqI	TCGA	4 cut(s)	11, 345, 354, 424
TasI	AATT	2 cut(s)	83, 341
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	4 cut(s)	98, 167, 246, 368
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	96, 159, 177, 282
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.