Rh4AG270800

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
58689857 .. 58691377
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG270800.1

Sequence Viewer

Length: 1023 bp
ATGAATTTGCAACCTGTATCAGTTCTTCTACAAAGCTGGAAGCCTCCAATGACGTACGGCTCGCCGTTTATGCCTAGGTCATCGTCCCAATTGCAACCCTTAAATAAGCACACGCTCACCATGACGTTGCCGGCGGCCTCCGAACTCTCTCCACGCAAATGGAGCCTTCAGTACTCGCATCTGTCACCAGTTCCTGCTCGGCACATAGCTCCTGTTAGCGCAGCCAGGTTGCCATTGCAATCGAGCTGCTTGGAATCACTTGTCCCAGTACTCAGCGCAGCAGCTTGGGCAGTCCAGCTGATATCGAGCTTGCTCATGTTCTTCAGGGAGTCTCAAAGCCCTAGATTATTAGACCAAAGACAAAGTAGCGGCTTAGTTCCGCAAGAGGTAGGGAAATCAGGGATGTGCAAACCATTTCTAGATGCTACTCCAACTCATTACACTGTAAAAATAGAGTTATATAACTCTATATTTTCAAGGCTAAAGAATTTTTGTGAAGAGGATCCCTATGAATCAAGAGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTACTCTACCCAGATGGAAACAAGAGAAGAAATGTGGAAGGTCACATCTCTCTCTACTTGGAAATAGCTGGAACAAATTTATTTCAGCCTGGTTGGGAGGTACATGTTGATTTTAGATTGTTCTTGCTTGATCAGCATAGAAGAGTCTACTTGGTTTTTGAAGATGCTTCTACACAGAAAATGTGCTTCAATGGAGATATGCCTTGTGCGGCCGGTTTTGATAAGCTTATCAGTGTTAAAGATTTTACTGATGACTCCAACGGATATCTAGTTGATGACACGTGCGTGTTTGGTGCTGAGGTCTTTGTCTGTAAAGAAAGGAGAACAGGCAAAGGAGAGTGTCTATCAAGGATCCAGAATCCTTCAACGTACAAGTATGTTTGGAAAATTGATAATTTTTTAAAGACAGATGCCGTATGCCATTGTTCAGAAGCATTCAGTGCTGGAAATCAGAAATGGTATATTTGTTAA

Protein Analysis

340

Amino Acids

38.55

Weight (kDa)

7.95

Isoelectric Point (pI)

60.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 146 - 285 6.9e-31 MATH domain
MATH PF00917 158 - 287 4.2e-12 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 699
AciI CCGC 4 cut(s) 134, 369, 380, 761
AclWI GGATC 4 cut(s) 497, 510, 898, 911
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 3 cut(s) 4, 487, 628
AcuI CTGAAG 2 cut(s) 152, 307
AcvI CACGTG 1 cut(s) 834
AfaI GTAC 6 cut(s) 56, 173, 270, 555, 654, 923
AflIII ACRYGT 2 cut(s) 655, 831
AgsI TTSAA 5 cut(s) 477, 527, 713, 742, 918
AjnI CCWGG 2 cut(s) 224, 640
AleI CACNNNNGTG 1 cut(s) 836
AluBI AGCT 9 cut(s) 36, 209, 246, 284, 298, 309, 530, 620, 778
AluI AGCT 9 cut(s) 36, 209, 246, 284, 298, 309, 530, 620, 778
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 4 cut(s) 497, 510, 898, 911
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 2 cut(s) 135, 762
ApeKI GCWGC 4 cut(s) 221, 246, 278, 281
ApoI RAATTY 3 cut(s) 4, 487, 628
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 2 cut(s) 221, 278
AsuHPI GGTGA 2 cut(s) 109, 177
AvrII CCTAGG 1 cut(s) 74
BamHI GGATCC 2 cut(s) 502, 903
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbrPI CACGTG 1 cut(s) 834
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 4 cut(s) 233, 233, 290, 293
BccI CCATC 1 cut(s) 560
BceAI ACGGC 3 cut(s) 49, 73, 950
BciT130I CCWGG 2 cut(s) 226, 642
BciVI GTATCC 1 cut(s) 530
BclI TGATCA 1 cut(s) 682
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 4 cut(s) 75, 342, 419, 821
BfuI GTATCC 1 cut(s) 530
BisI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 762
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 7 cut(s) 136, 223, 248, 280, 283, 371, 763
BmcAI AGTACT 2 cut(s) 173, 270
Bme1390I CCNGG 2 cut(s) 226, 642
BmiI GGNNCC 3 cut(s) 164, 504, 905
BmrFI CCNGG 2 cut(s) 226, 642
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 4 cut(s) 187, 412, 706, 952
BmuI ACTGGG 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 849
BsaAI YACGTR 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 74
Bse118I RCCGGY 2 cut(s) 130, 764
Bse1I ACTGG 3 cut(s) 188, 266, 555
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 2 cut(s) 226, 642
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 286, 840
BseNI ACTGG 3 cut(s) 188, 266, 555
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 4 cut(s) 233, 233, 290, 293
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 2 cut(s) 137, 764
BsiEI CGRYCG 1 cut(s) 765
BsiSI CCGG 2 cut(s) 131, 765
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 70, 248
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 70, 248
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 2 cut(s) 137, 764
Bsp143I GATC 3 cut(s) 502, 682, 903
BspACI CCGC 4 cut(s) 134, 369, 380, 761
BspANI GGCC 2 cut(s) 137, 764
BspCNI CTCAG 2 cut(s) 285, 841
BspLI GGNNCC 3 cut(s) 164, 504, 905
BspPI GGATC 4 cut(s) 497, 510, 898, 911
BsrDI GCAATG 1 cut(s) 233
BsrFI RCCGGY 2 cut(s) 130, 764
BsrI ACTGG 3 cut(s) 188, 266, 555
BssAI RCCGGY 2 cut(s) 130, 764
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 502, 682, 903
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 226, 642
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 492, 688
BstAPI GCANNNNNTGC 1 cut(s) 992
BstBAI YACGTR 1 cut(s) 834
BstC8I GCNNGC 3 cut(s) 62, 132, 311
BstDEI CTNAG 3 cut(s) 272, 373, 849
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 221, 278
BstKTI GATC 3 cut(s) 505, 685, 906
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 502, 682, 903
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 5 cut(s) 70, 162, 287, 685, 992
BstNI CCWGG 2 cut(s) 226, 642
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 224, 640
BstV1I GCAGC 4 cut(s) 233, 233, 290, 293
BstX2I RGATCY 2 cut(s) 502, 903
BstXI CCANNNNNNTGG 1 cut(s) 159
BstYI RGATCY 2 cut(s) 502, 903
BstZI CGGCCG 1 cut(s) 762
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 2 cut(s) 137, 764
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 441, 790, 997
Cac8I GCNNGC 3 cut(s) 62, 132, 311
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 221, 278
Cfr10I RCCGGY 2 cut(s) 130, 764
Csp6I GTAC 6 cut(s) 55, 172, 269, 554, 653, 922
CviAII CATG 3 cut(s) 121, 316, 656
CviQI GTAC 6 cut(s) 55, 172, 269, 554, 653, 922
DdeI CTNAG 3 cut(s) 272, 373, 849
DpnI GATC 3 cut(s) 504, 684, 905
DpnII GATC 3 cut(s) 502, 682, 903
DraI TTTAAA 1 cut(s) 954
EaeI YGGCCR 1 cut(s) 762
EagI CGGCCG 1 cut(s) 762
Eam1104I CTCTTC 2 cut(s) 492, 688
EarI CTCTTC 2 cut(s) 492, 688
EclXI CGGCCG 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 74
Eco32I GATATC 2 cut(s) 303, 818
Eco52I CGGCCG 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 152, 307
Eco72I CACGTG 1 cut(s) 834
EcoRII CCWGG 2 cut(s) 224, 640
EcoRV GATATC 2 cut(s) 303, 818
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 124, 319, 659
FaqI GGGAC 2 cut(s) 70, 248
FatI CATG 3 cut(s) 120, 315, 655
FbaI TGATCA 1 cut(s) 682
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 762
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 762
FspBI CTAG 4 cut(s) 75, 342, 419, 821
GlaI GCGC 2 cut(s) 220, 277
GluI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 762
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 137, 764
HapII CCGG 2 cut(s) 131, 765
HhaI GCGC 2 cut(s) 221, 278
Hin1II CATG 3 cut(s) 124, 319, 659
Hin6I GCGC 2 cut(s) 219, 276
HinP1I GCGC 2 cut(s) 219, 276
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 6 cut(s) 254, 329, 512, 696, 806, 910
HpaII CCGG 2 cut(s) 131, 765
HphI GGTGA 2 cut(s) 109, 177
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 3 cut(s) 142, 982, 1005
Hpy188III TCNNGA 3 cut(s) 419, 516, 907
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 176, 584, 924
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 4 cut(s) 53, 125, 833, 920
HpyCH4V TGCA 4 cut(s) 10, 94, 238, 408
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 162, 287, 685, 992
HpyF3I CTNAG 3 cut(s) 272, 373, 849
HpySE526I ACGT 4 cut(s) 53, 125, 833, 920
Hsp92II CATG 3 cut(s) 124, 319, 659
HspAI GCGC 2 cut(s) 219, 276
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 3 cut(s) 502, 682, 903
LmnI GCTCC 2 cut(s) 162, 214
Lsp1109I GCAGC 4 cut(s) 233, 233, 290, 293
LweI GCATC 4 cut(s) 187, 412, 706, 952
MaeI CTAG 4 cut(s) 75, 342, 419, 821
MaeII ACGT 4 cut(s) 53, 125, 833, 920
MaeIII GTNAC 2 cut(s) 183, 593
MalI GATC 3 cut(s) 504, 684, 905
MboI GATC 3 cut(s) 502, 682, 903
MboII GAAGA 6 cut(s) 17, 313, 509, 591, 705, 725
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 2 cut(s) 502, 903
MluCI AATT 6 cut(s) 4, 89, 487, 628, 939, 946
MlyI GAGTC 3 cut(s) 338, 705, 800
MmeI TCCRAC 2 cut(s) 455, 834
MnlI CCTC 7 cut(s) 54, 148, 379, 493, 527, 643, 844
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 4 cut(s) 101, 789, 953, 1021
MslI CAYNNNNRTG 2 cut(s) 157, 836
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 2 cut(s) 131, 765
MspR9I CCNGG 2 cut(s) 226, 642
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 2 cut(s) 226, 642
MwoI GCNNNNNNNGC 5 cut(s) 70, 162, 287, 685, 992
NaeI GCCGGC 1 cut(s) 132
NdeII GATC 3 cut(s) 502, 682, 903
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 124, 319, 659
NlaIV GGNNCC 3 cut(s) 164, 504, 905
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 183, 593
NspI RCATGY 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 836
PciI ACATGT 1 cut(s) 655
PctI GAATGC 1 cut(s) 986
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 254, 512, 910
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 7 cut(s) 136, 223, 248, 280, 283, 371, 763
PleI GAGTC 3 cut(s) 337, 704, 800
PmaCI CACGTG 1 cut(s) 834
PmlI CACGTG 1 cut(s) 834
PpsI GAGTC 3 cut(s) 337, 704, 800
Ppu21I YACGTR 1 cut(s) 834
PscI ACATGT 1 cut(s) 655
Psp6I CCWGG 2 cut(s) 224, 640
PspCI CACGTG 1 cut(s) 834
PspGI CCWGG 2 cut(s) 224, 640
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 164, 504, 905
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 502, 903
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 6 cut(s) 56, 173, 270, 555, 654, 923
RsaNI GTAC 6 cut(s) 55, 172, 269, 554, 653, 922
RseI CAYNNNNRTG 2 cut(s) 157, 836
SaqAI TTAA 4 cut(s) 101, 789, 953, 1021
SatI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 762
Sau3AI GATC 3 cut(s) 502, 682, 903
ScaI AGTACT 2 cut(s) 173, 270
SchI GAGTC 3 cut(s) 338, 705, 800
ScrFI CCNGG 2 cut(s) 226, 642
SfaNI GCATC 4 cut(s) 187, 412, 706, 952
SmiMI CAYNNNNRTG 2 cut(s) 157, 836
Sse9I AATT 6 cut(s) 4, 89, 487, 628, 939, 946
SsiI CCGC 4 cut(s) 134, 369, 380, 761
SspMI CTAG 4 cut(s) 75, 342, 419, 821
StyD4I CCNGG 2 cut(s) 224, 640
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 4 cut(s) 56, 128, 836, 923
TaqI TCGA 2 cut(s) 242, 305
TasI AATT 6 cut(s) 4, 89, 487, 628, 939, 946
TatI WGTACW 2 cut(s) 171, 268
TauI GCSGC 3 cut(s) 137, 372, 764
TfiI GAWTC 3 cut(s) 254, 512, 910
Tru1I TTAA 4 cut(s) 101, 789, 953, 1021
Tru9I TTAA 4 cut(s) 101, 789, 953, 1021
TscAI CASTG 3 cut(s) 448, 790, 997
TseFI GTSAC 2 cut(s) 183, 593
TseI GCWGC 4 cut(s) 221, 246, 278, 281
Tsp45I GTSAC 2 cut(s) 183, 593
TspDTI ATGAA 2 cut(s) 17, 525
TspGWI ACGGA 1 cut(s) 828
TspRI CASTG 3 cut(s) 448, 790, 997
XapI RAATTY 3 cut(s) 4, 487, 628
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 659
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 4 cut(s) 75, 342, 419, 821
ZrmI AGTACT 2 cut(s) 173, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.