Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

58708414 .. 58711931

Gene Structure 3518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAAATAGTGTCGTTCTCATCTTTAAAATCAGAGGACAGATATGAATCAGGGGAATTTGAGATTGAAGGATACAAATGGAAACTAGTGCTCTTCCCGAGTGGAAACAAGAAGCATAATGTTAATGACCACATCTCTCTCTACCTGGAAATGGGTGGACAAAAAGCAATAGAGACGGGGAGTATTGTAACGGTTGACTACAAGTTTTTTTTGCTTAATCGGCAAAAGGAGAAGAAGACCTACCTGGTTCTTGAAGATGCCAATAAAAAGGAGAAGAAGTATTGTTTTTATAGGACAATAGTTGGTGGTTTGGCTGGATTTGATCGATTTATCTCTATTGAAGATTTTACTGATGCCTTCAATGGTTATCTCATTGATGATACATGTGAGTTTGGAGCGGATGTCTTTGTATCTAAATCGAGAAGAAAAGGCAAAGGAGAGCGTGTTTCAATGAATCTCAATACCATTATGTACAAACACACTTGGAAAGTTACTGACTTTTCGAAGTTAGACACACCATCTTGTTCACAACCATTCACCGCTGCAGATCAAAAATATTGCACATGGAAATTGGTGCTCTATCCCAGGGGTCTAGGCATCGGAAAGGGTAGTCATCTTTCTGTTTTTCTGCATGTATATGAACCGGAAAACCAGCTTCCTATTGGATCTAAGATACTTGCGGAGTATACCATACGCATTATGGATCAAATCCATGGCAAGCATCGTTCTATTAAAGGTAAAAAGTGGTTCAGTGCCCCGTTTTGGAGTTGGGGTCACTATCAGTTCATTACACAAGAAGCCAACGCGGCGTGCCTTAAGAAAGATAGTTGTATATTGGAGGTCGAAATCTGTATCTTAGGACTTTCCATTCCTGGAATTTCTACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

296

Amino Acids

33.87

Weight (kDa)

8.86

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	2 - 135	7.2e-25	MATH domain
MATH	PF00917	5 - 136	4.3e-07	MATH domain
MATH_2	PF22486	159 - 283	2.9e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	1 cut(s)	806
AciI	CCGC	4 cut(s)	398, 540, 680, 806
AclWI	GGATC	2 cut(s)	673, 711
AcsI	RAATTY	2 cut(s)	56, 876
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	151, 762
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	68, 254, 341, 361, 450
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	4 cut(s)	144, 243, 584, 871
AluBI	AGCT	1 cut(s)	655
AluI	AGCT	1 cut(s)	655
Alw21I	GWGCWC	2 cut(s)	93, 579
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	673, 711
Ama87I	CYCGRG	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	56, 876
AsuHPI	GGTGA	1 cut(s)	529
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	93, 579
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	1 cut(s)	526
BciT130I	CCWGG	4 cut(s)	146, 245, 586, 873
BciVI	GTATCC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	2 cut(s)	86, 593
BfmI	CTRYAG	1 cut(s)	543
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	806
BisI	GCNGC	2 cut(s)	543, 807
BlsI	GCNGC	2 cut(s)	544, 808
Bme1390I	CCNGG	4 cut(s)	146, 245, 586, 873
BmeT110I	CYCGRG	1 cut(s)	97
BmrFI	CCNGG	4 cut(s)	146, 245, 586, 873
BmsI	GCATC	4 cut(s)	247, 343, 606, 730
BpiI	GAAGAC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	584, 585, 712
BsaWI	WCCGGW	1 cut(s)	643
BsaXI	ACNNNNNCTCC	8 cut(s)	263, 293, 387, 417, 429, 459, 757, 787
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 762
Bse8I	GATNNNNATC	1 cut(s)	46
BseBI	CCWGG	4 cut(s)	146, 245, 586, 873
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	584, 585, 712
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	151, 762
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	93, 579
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	151, 762
BsmAI	GTCTC	1 cut(s)	167
BsmBI	CGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	93, 579, 757
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	322, 547, 665, 703
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	4 cut(s)	398, 540, 680, 806
BspDI	ATCGAT	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	806
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	673, 711
BspQI	GCTCTTC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	503
BspTI	CTTAAG	1 cut(s)	815
BsrBI	CCGCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	584, 585, 712
BssMI	GATC	4 cut(s)	322, 547, 665, 703
BssNAI	GTATAC	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	712
Bst1107I	GTATAC	1 cut(s)	687
Bst2UI	CCWGG	4 cut(s)	146, 245, 586, 873
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	815
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	719, 811
BstDEI	CTNAG	2 cut(s)	669, 856
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	806
BstKTI	GATC	4 cut(s)	325, 550, 668, 706
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	4 cut(s)	322, 547, 665, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 806
BstNI	CCWGG	4 cut(s)	146, 245, 586, 873
BstNSI	RCATGY	2 cut(s)	387, 635
BstSCI	CCNGG	4 cut(s)	144, 243, 584, 871
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	757
BstUI	CGCG	1 cut(s)	806
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	665
BstZ17I	GTATAC	1 cut(s)	687
Bsu15I	ATCGAT	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	65
BsuTUI	ATCGAT	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	2 cut(s)	719, 811
ClaI	ATCGAT	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	384, 564, 632, 713
CviJI	RGCY	3 cut(s)	314, 655, 800
CviKI_1	RGCY	3 cut(s)	314, 655, 800
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	669, 856
DpnI	GATC	4 cut(s)	324, 549, 667, 705
DpnII	GATC	4 cut(s)	322, 547, 665, 703
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	97
EcoRII	CCWGG	4 cut(s)	144, 243, 584, 871
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	4 cut(s)	387, 567, 635, 716
FatI	CATG	4 cut(s)	383, 563, 631, 712
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	2 cut(s)	543, 807
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	543, 807
FspBI	CTAG	2 cut(s)	86, 593
GluI	GCNGC	2 cut(s)	543, 807
HapII	CCGG	1 cut(s)	644
Hin1II	CATG	4 cut(s)	387, 567, 635, 716
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	47, 454
HpaII	CCGG	1 cut(s)	644
HphI	GGTGA	1 cut(s)	529
Hpy166II	GTNNAC	4 cut(s)	158, 196, 527, 687
Hpy188I	TCNGA	2 cut(s)	34, 602
Hpy188III	TCNNGA	3 cut(s)	97, 251, 420
Hpy8I	GTNNAC	4 cut(s)	158, 196, 527, 687
HpyAV	CCTTC	2 cut(s)	62, 367
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	884
HpyCH4V	TGCA	3 cut(s)	545, 561, 631
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 806
HpyF3I	CTNAG	2 cut(s)	669, 856
HpySE526I	ACGT	1 cut(s)	884
Hsp92II	CATG	4 cut(s)	387, 567, 635, 716
Kzo9I	GATC	4 cut(s)	322, 547, 665, 703
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	4 cut(s)	247, 343, 606, 730
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	2 cut(s)	86, 593
MaeII	ACGT	1 cut(s)	884
MaeIII	GTNAC	3 cut(s)	187, 490, 773
MalI	GATC	4 cut(s)	324, 549, 667, 705
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	4 cut(s)	322, 547, 665, 703
MboII	GAAGA	7 cut(s)	85, 244, 247, 266, 286, 353, 435
MflI	RGATCY	1 cut(s)	665
MhlI	GDGCHC	3 cut(s)	93, 579, 757
MluCI	AATT	3 cut(s)	56, 569, 876
MnlI	CCTC	2 cut(s)	28, 832
MseI	TTAA	5 cut(s)	26, 123, 216, 732, 816
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	1 cut(s)	542
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	1 cut(s)	644
MspR9I	CCNGG	4 cut(s)	146, 245, 586, 873
MvaI	CCWGG	4 cut(s)	146, 245, 586, 873
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	2 cut(s)	220, 806
NcoI	CCATGG	1 cut(s)	712
NdeII	GATC	4 cut(s)	322, 547, 665, 703
NlaIII	CATG	4 cut(s)	387, 567, 635, 716
NmuCI	GTSAC	1 cut(s)	773
NspI	RCATGY	2 cut(s)	387, 635
NspV	TTCGAA	1 cut(s)	503
PasI	CCCWGGG	1 cut(s)	585
PciI	ACATGT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	47, 454
PfoI	TCCNGGA	1 cut(s)	871
PkrI	GCNGC	2 cut(s)	544, 808
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	4 cut(s)	144, 243, 584, 871
PspGI	CCWGG	4 cut(s)	144, 243, 584, 871
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	665
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	636
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	5 cut(s)	26, 123, 216, 732, 816
SatI	GCNGC	2 cut(s)	543, 807
Sau3AI	GATC	4 cut(s)	322, 547, 665, 703
ScrFI	CCNGG	4 cut(s)	146, 245, 586, 873
SduI	GDGCHC	3 cut(s)	93, 579, 757
SetI	ASST	7 cut(s)	147, 242, 246, 657, 739, 843, 887
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	4 cut(s)	247, 343, 606, 730
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	3 cut(s)	56, 569, 876
SsiI	CCGC	4 cut(s)	398, 540, 680, 806
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	2 cut(s)	86, 593
StyD4I	CCNGG	4 cut(s)	144, 243, 584, 871
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	887
TaqI	TCGA	4 cut(s)	325, 419, 503, 843
TasI	AATT	3 cut(s)	56, 569, 876
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	2 cut(s)	47, 454
Tru1I	TTAA	5 cut(s)	26, 123, 216, 732, 816
Tru9I	TTAA	5 cut(s)	26, 123, 216, 732, 816
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	5 cut(s)	17, 60, 467, 654, 775
TspRI	CASTG	1 cut(s)	757
Vha464I	CTTAAG	1 cut(s)	815
XapI	RAATTY	2 cut(s)	56, 876
XceI	RCATGY	2 cut(s)	387, 635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	659, 697
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	2 cut(s)	86, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.