Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Reverse (-)

81063934 .. 81069816

Gene Structure 5883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTGGTCTTGACATTAACCACAACTGCCTAGTCTGGAGATCAGTAACGAGGAAACCTCCAAAACACTACAAAATGAGCATAAAGTCGTTCTCAAGGCTACAATCAGAGGAAAAGTACGAATCGGGTGAGTTTGAGGTCGGAGGATACAAGTGGAAACTAGTACTCTTCCCCAATGGAAACAAAAACCGTGATGTGAAAGATCACATCTCTCTCTACTTGGAAATGGGTGGAGACAAAGCAATAGAACCCGGGAAGATTGTAACAGTTGATTACAAGTTGTTTTTGCTTAATCGGCACAAGGGGAAAGAATCGTACCTGGTTCTTGAAGATTCCAATAAGAGAGAGAAAAGGTACTGTATTTATCGGACAATTGTTGGTGGTTTGGCTGGTTTTGATCGATTCATCCCTCTTCAAGATTTTAGTGATGCATCAAATGGTTATCTCATTGATGACAGATGTGAGTTCGGAGCAGAGGTCTTTGTTTCTGAAACGACAAGAAAAGGCAAAGGAGAGTGTGTATTCATGAGTCTCAACACTGCTATATACAAGCATGTTTGGAAGGTTACTAACTTTTCGAAGTTAGGCGATCAACCTTATTACTCACTACCATTCACCGCAAACGATCAAAAATATTGCGCATGGAGACTGGTTCTCTATCCCAAGGGATTTCTCACTGGAAAGGATAGTCATCTTTCTCTTCTTTTGTATTTGGACGAACCACATAAGCTTCCTCCTGGATCAAAAATACTTGCGGAATTTACTCTACGCATTTTGGATCAAATCCATGGGAACCATCGTTCTGAGCAGCAGTGGCGCCGCCATTGGCAACCTCAACCTAAACACCATTATCCGCAACAAAGAGCCAAGGCAGAAGGTACTTCCTCTGATCAGCTATCAGCTTCCAGAAGGGCCAAAACTAGAGATGAACTACATATGGATATTTTGCAAAATGTAGAGAAGCAGAGCCGACGTTGGCAACGAGAGAAGAAGGCCTCCGATATCAGAGCAAAAGAACAACGAGCTGCCAAAGATAGAGAAGAAGAATATCATCGTATTGCCCTGGCTCTGTTGTTTCTCTGTGTTTTCTTTGCCTTGGTTTGTGCCATATCATCTCAGTTCCAACGCCATGCAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

381

Amino Acids

44.41

Weight (kDa)

9.47

Isoelectric Point (pI)

52.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 160	1.9e-27	MATH domain
MATH	PF00917	28 - 160	5.8e-06	MATH domain
MATH_2	PF22486	184 - 277	1.1e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	816
AciI	CCGC	5 cut(s)	618, 755, 820, 854, 1138
AclWI	GGATC	2 cut(s)	748, 786
AcsI	RAATTY	1 cut(s)	758
AcyI	GRCGYC	1 cut(s)	817
AfaI	GTAC	5 cut(s)	119, 165, 317, 356, 880
AgsI	TTSAA	2 cut(s)	329, 416
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	318, 736, 1062
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
AluBI	AGCT	4 cut(s)	730, 895, 902, 1025
AluI	AGCT	4 cut(s)	730, 895, 902, 1025
Alw26I	GTCTC	3 cut(s)	228, 536, 640
AlwI	GGATC	2 cut(s)	748, 786
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	912, 993
ApeKI	GCWGC	2 cut(s)	808, 1025
ApoI	RAATTY	1 cut(s)	758
AspLEI	GCGC	2 cut(s)	641, 819
AspS9I	GGNCC	1 cut(s)	912
AsuC2I	CCSGG	2 cut(s)	252, 253
AsuHPI	GGTGA	2 cut(s)	140, 607
AsuII	TTCGAA	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	816
BbvI	GCAGC	2 cut(s)	820, 1012
BccI	CCATC	1 cut(s)	804
BciT130I	CCWGG	3 cut(s)	320, 738, 1064
BciVI	GTATCC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	2 cut(s)	252, 253
BcoDI	GTCTC	3 cut(s)	228, 536, 640
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	32, 161, 921
BfoI	RGCGCY	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	809, 820, 1026
BlsI	GCNGC	3 cut(s)	810, 821, 1027
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	5 cut(s)	252, 253, 320, 738, 1064
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	912
BmiI	GGNNCC	2 cut(s)	794, 818
BmrFI	CCNGG	5 cut(s)	252, 253, 320, 738, 1064
BmsI	GCATC	2 cut(s)	418, 440
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpmI	CTGGAG	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	252, 253
Bsa29I	ATCGAT	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	817
BsaJI	CCNNGG	6 cut(s)	251, 663, 787, 867, 1062, 1095
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 504, 534
Bse1I	ACTGG	2 cut(s)	654, 682
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	3 cut(s)	320, 738, 1064
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	6 cut(s)	251, 663, 787, 867, 1062, 1095
BseGI	GGATG	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	690
BseMII	CTCAG	2 cut(s)	795, 1130
BseNI	ACTGG	2 cut(s)	654, 682
BseXI	GCAGC	2 cut(s)	820, 1012
BshFI	GGCC	2 cut(s)	914, 995
BshNI	GGYRCC	1 cut(s)	816
BshVI	ATCGAT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	3 cut(s)	228, 536, 640
BsnI	GGCC	2 cut(s)	914, 995
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	578
Bsp143I	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
Bsp19I	CCATGG	1 cut(s)	787
BspACI	CCGC	5 cut(s)	618, 755, 820, 854, 1138
BspANI	GGCC	2 cut(s)	914, 995
BspCNI	CTCAG	2 cut(s)	796, 1129
BspDI	ATCGAT	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	794, 818
BspPI	GGATC	2 cut(s)	748, 786
BspT104I	TTCGAA	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	816
BsrI	ACTGG	2 cut(s)	654, 682
BssECI	CCNNGG	6 cut(s)	251, 663, 787, 867, 1062, 1095
BssMI	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
BssNI	GRCGYC	1 cut(s)	817
BssT1I	CCWWGG	4 cut(s)	663, 787, 867, 1095
Bst2UI	CCWGG	3 cut(s)	320, 738, 1064
Bst4CI	ACNGT	3 cut(s)	191, 268, 359
Bst6I	CTCTTC	3 cut(s)	173, 417, 705
BstACI	GRCGYC	1 cut(s)	817
BstBI	TTCGAA	1 cut(s)	578
BstDEI	CTNAG	2 cut(s)	804, 1116
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	641, 819
BstKTI	GATC	8 cut(s)	44, 205, 400, 592, 628, 743, 781, 892
BstMAI	GTCTC	3 cut(s)	228, 536, 640
BstMBI	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 814
BstNI	CCWGG	3 cut(s)	320, 738, 1064
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	5 cut(s)	250, 251, 318, 736, 1062
BstV1I	GCAGC	2 cut(s)	820, 1012
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	914, 995
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	405
BtsI	GCAGTG	2 cut(s)	537, 818
BtsIMutI	CAGTG	3 cut(s)	537, 675, 818
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	641, 819
Cfr13I	GGNCC	1 cut(s)	912
Cfr9I	CCCGGG	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	5 cut(s)	118, 164, 316, 355, 879
CviAII	CATG	5 cut(s)	526, 554, 642, 788, 1130
CviQI	GTAC	5 cut(s)	118, 164, 316, 355, 879
DdeI	CTNAG	2 cut(s)	804, 1116
DinI	GGCGCC	1 cut(s)	818
DpnI	GATC	8 cut(s)	43, 204, 399, 591, 627, 742, 780, 891
DpnII	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
Eam1104I	CTCTTC	3 cut(s)	173, 417, 705
EarI	CTCTTC	3 cut(s)	173, 417, 705
Eco130I	CCWWGG	4 cut(s)	663, 787, 867, 1095
Eco147I	AGGCCT	1 cut(s)	995
Eco32I	GATATC	1 cut(s)	1003
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	318, 736, 1062
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	4 cut(s)	663, 787, 867, 1095
EcoT22I	ATGCAT	1 cut(s)	433
EgeI	GGCGCC	1 cut(s)	818
EheI	GGCGCC	1 cut(s)	818
ErhI	CCWWGG	4 cut(s)	663, 787, 867, 1095
FaeI	CATG	5 cut(s)	529, 557, 645, 791, 1133
FatI	CATG	5 cut(s)	525, 553, 641, 787, 1129
FauNDI	CATATG	1 cut(s)	936
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	809, 820, 1026
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	809, 820, 1026
FspBI	CTAG	3 cut(s)	32, 161, 921
FspI	TGCGCA	1 cut(s)	640
GlaI	GCGC	2 cut(s)	640, 818
GluI	GCNGC	3 cut(s)	809, 820, 1026
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	2 cut(s)	914, 995
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	641, 819
Hin1I	GRCGYC	1 cut(s)	817
Hin1II	CATG	5 cut(s)	529, 557, 645, 791, 1133
Hin6I	GCGC	2 cut(s)	639, 817
HinP1I	GCGC	2 cut(s)	639, 817
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	5 cut(s)	122, 311, 332, 402, 529
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	140, 607
Hpy188I	TCNGA	9 cut(s)	109, 143, 369, 470, 490, 805, 889, 1000, 1007
Hpy188III	TCNNGA	6 cut(s)	11, 37, 326, 416, 526, 906
Hpy99I	CGWCG	1 cut(s)	975
HpyAV	CCTTC	4 cut(s)	556, 869, 903, 985
HpyCH4III	ACNGT	3 cut(s)	191, 268, 359
HpyCH4IV	ACGT	1 cut(s)	973
HpyCH4V	TGCA	3 cut(s)	431, 949, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 814
HpyF3I	CTNAG	2 cut(s)	804, 1116
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	1 cut(s)	817
Hsp92II	CATG	5 cut(s)	529, 557, 645, 791, 1133
HspAI	GCGC	2 cut(s)	639, 817
KasI	GGCGCC	1 cut(s)	816
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	2 cut(s)	820, 1012
LweI	GCATC	2 cut(s)	418, 440
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	3 cut(s)	32, 161, 921
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	3 cut(s)	46, 262, 565
MalI	GATC	8 cut(s)	43, 204, 399, 591, 627, 742, 780, 891
MboI	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
MboII	GAAGA	8 cut(s)	160, 268, 341, 404, 692, 1000, 1052, 1055
MfeI	CAATTG	1 cut(s)	372
MluCI	AATT	2 cut(s)	372, 758
Mly113I	GGCGCC	1 cut(s)	817
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	121
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	2 cut(s)	18, 291
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	5 cut(s)	252, 253, 320, 738, 1064
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	3 cut(s)	320, 738, 1064
MwoI	GCNNNNNNNGC	2 cut(s)	295, 814
NarI	GGCGCC	1 cut(s)	817
NciI	CCSGG	2 cut(s)	252, 253
NcoI	CCATGG	1 cut(s)	787
NdeI	CATATG	1 cut(s)	936
NdeII	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
NlaIII	CATG	5 cut(s)	529, 557, 645, 791, 1133
NlaIV	GGNNCC	2 cut(s)	794, 818
NsbI	TGCGCA	1 cut(s)	640
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	578
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	995
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PfeI	GAWTC	4 cut(s)	122, 311, 332, 402
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	3 cut(s)	810, 821, 1027
PleI	GAGTC	1 cut(s)	537
PluTI	GGCGCC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	537
Psp6I	CCWGG	3 cut(s)	318, 736, 1062
PspGI	CCWGG	3 cut(s)	318, 736, 1062
PspN4I	GGNNCC	2 cut(s)	794, 818
PspPI	GGNCC	1 cut(s)	912
RsaI	GTAC	5 cut(s)	119, 165, 317, 356, 880
RsaNI	GTAC	5 cut(s)	118, 164, 316, 355, 879
SaqAI	TTAA	2 cut(s)	18, 291
SatI	GCNGC	3 cut(s)	809, 820, 1026
Sau3AI	GATC	8 cut(s)	41, 202, 397, 589, 625, 740, 778, 889
Sau96I	GGNCC	1 cut(s)	912
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	5 cut(s)	252, 253, 320, 738, 1064
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	418, 440
SfoI	GGCGCC	1 cut(s)	818
SfuI	TTCGAA	1 cut(s)	578
SmaI	CCCGGG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	2 cut(s)	372, 758
SseBI	AGGCCT	1 cut(s)	995
SsiI	CCGC	5 cut(s)	618, 755, 820, 854, 1138
SspDI	GGCGCC	1 cut(s)	816
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	3 cut(s)	32, 161, 921
StuI	AGGCCT	1 cut(s)	995
StyD4I	CCNGG	5 cut(s)	250, 251, 318, 736, 1062
StyI	CCWWGG	4 cut(s)	663, 787, 867, 1095
TaaI	ACNGT	3 cut(s)	191, 268, 359
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	2 cut(s)	400, 578
TasI	AATT	2 cut(s)	372, 758
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	4 cut(s)	122, 311, 332, 402
Tru1I	TTAA	2 cut(s)	18, 291
Tru9I	TTAA	2 cut(s)	18, 291
TscAI	CASTG	3 cut(s)	544, 682, 818
TseI	GCWGC	2 cut(s)	808, 1025
TspDTI	ATGAA	3 cut(s)	394, 514, 942
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	3 cut(s)	544, 682, 818
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	251
XspI	CTAG	3 cut(s)	32, 161, 921
ZrmI	AGTACT	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.