Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Forward (+)

9108648 .. 9109565

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGCATAAAGTCGTTCTCAAGGCTACAATCAGAGGAAAAGTACGAATCGGGTGAGTTTGAGGTCGGAGGATACAAGTGGAAACTAGTACTCTTCCCCAATGGAAACAAAAACCGTGATGTGAAAGATCACATCTCTCTGTACTTGGAAATGGGTGGAGACAAAGCAATAGAACCCGGGAAGATTGTAACAGTTGATTACAAGTTGTTTTTGCTTAATCGGCACAAGGGGAAAGAATCGTACCTGGTTCTTGAAGATTCCAATAAGAGAGAGAAAAAGTACTGTATTTATCGGACAATTGTTGGTGGTTTGGCTGGTTTTGATCGATTCATCCCTCTTCAAGATTTTAGTGATGCATCAAATGGTTATCTCATTGATGACAGATGTGAGTTTGGAGCAGAGGTCTTTGTTTCTGAAACGACAAGAAAAGGCAAAGGAGAGTGTGTATTCATGAGTCTCAACACTGCTATATGCAAGCATGTTTGGAAGGTTACTAACTTTTCGAAGTTAGGCGCTCAACCTTATTACTCACTACCATTCACAGCAAACGATCAAAAATATTGCTCGTGGAGATTGGTTCTCTATCCCAAGGGACTTCTCACTGGAAAGGATAGTCATCTTTCTCTTCTTTTGTATTTGGATGAACCACATAAGCTTCCTCCTGGATCAAAAATACTTGCGGAATTTACTCTACGCATTTTGGATCAAATCCATGGGAACCATCGTTCTGGTAAAGTTAATGCCTGCTGGTTCATTGCCCAACCCACCAAACGTGCTTGTGGTTTCGACCAATTGATTACACAAGAAAAAAACGCAAGATTTTCAATGGATGATACTTGCATAATTGAGGTCGAAATTACTATCCAAGGACTTTCTATGCCAAGAATTTCTACACGCCCTTGGCCATGGAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

305

Amino Acids

34.95

Weight (kDa)

8.75

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	2 - 135	1.1e-26	MATH domain
MATH	PF00917	3 - 136	2.5e-06	MATH domain
MATH_2	PF22486	159 - 286	2.6e-22	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	2 cut(s)	673, 711
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	3 cut(s)	683, 885, 910
AfaI	GTAC	5 cut(s)	44, 90, 143, 242, 281
AgsI	TTSAA	3 cut(s)	254, 341, 825
AhlI	ACTAGT	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	243, 661
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	1 cut(s)	655
AluI	AGCT	1 cut(s)	655
Alw26I	GTCTC	2 cut(s)	153, 461
AlwI	GGATC	2 cut(s)	673, 711
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	902
ApoI	RAATTY	3 cut(s)	683, 885, 910
AspLEI	GCGC	1 cut(s)	515
AsuC2I	CCSGG	2 cut(s)	177, 178
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	904
BauI	CACGAG	1 cut(s)	565
BccI	CCATC	1 cut(s)	729
BciT130I	CCWGG	2 cut(s)	245, 663
BciVI	GTATCC	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	177, 178
BcoDI	GTCTC	2 cut(s)	153, 461
BcuI	ACTAGT	1 cut(s)	85
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	65
BmcAI	AGTACT	2 cut(s)	90, 281
Bme1390I	CCNGG	4 cut(s)	177, 178, 245, 663
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	4 cut(s)	177, 178, 245, 663
BmsI	GCATC	2 cut(s)	343, 365
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	4
BpuMI	CCSGG	2 cut(s)	177, 178
Bsa29I	ATCGAT	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	6 cut(s)	176, 588, 712, 865, 899, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 429, 459
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	245, 663
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	6 cut(s)	176, 588, 712, 865, 899, 905
BseGI	GGATG	3 cut(s)	330, 646, 835
BseJI	GATNNNNATC	1 cut(s)	615
BseMI	GCAATG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	607
BshFI	GGCC	1 cut(s)	904
BshVI	ATCGAT	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	606
BsmAI	GTCTC	2 cut(s)	153, 461
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	904
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	5 cut(s)	127, 322, 550, 665, 703
Bsp19I	CCATGG	2 cut(s)	712, 905
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	1 cut(s)	904
BspDI	ATCGAT	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	719
BspPI	GGATC	2 cut(s)	673, 711
BspT104I	TTCGAA	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	6 cut(s)	176, 588, 712, 865, 899, 905
BssMI	GATC	5 cut(s)	127, 322, 550, 665, 703
BssSI	CACGAG	1 cut(s)	565
BssT1I	CCWWGG	5 cut(s)	588, 712, 865, 899, 905
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	245, 663
Bst4CI	ACNGT	3 cut(s)	116, 193, 284
Bst6I	CTCTTC	3 cut(s)	98, 342, 630
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	476, 745
BstDSI	CCRYGG	2 cut(s)	712, 905
BstF5I	GGATG	3 cut(s)	330, 646, 835
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	5 cut(s)	130, 325, 553, 668, 706
BstMAI	GTCTC	2 cut(s)	153, 461
BstMBI	GATC	5 cut(s)	127, 322, 550, 665, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	2 cut(s)	245, 663
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	175, 176, 243, 661
BstXI	CCANNNNNNTGG	1 cut(s)	728
Bsu15I	ATCGAT	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	904
BsuTUI	ATCGAT	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	712, 905
BtsCI	GGATG	3 cut(s)	330, 646, 835
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 600
Cac8I	GCNNGC	2 cut(s)	476, 745
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	515
Cfr9I	CCCGGG	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	5 cut(s)	43, 89, 142, 241, 280
CviAII	CATG	4 cut(s)	451, 479, 713, 906
CviJI	RGCY	4 cut(s)	25, 314, 655, 904
CviKI_1	RGCY	4 cut(s)	25, 314, 655, 904
CviQI	GTAC	5 cut(s)	43, 89, 142, 241, 280
DpnI	GATC	5 cut(s)	129, 324, 552, 667, 705
DpnII	GATC	5 cut(s)	127, 322, 550, 665, 703
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	3 cut(s)	98, 342, 630
EarI	CTCTTC	3 cut(s)	98, 342, 630
Eco130I	CCWWGG	5 cut(s)	588, 712, 865, 899, 905
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	243, 661
EcoT14I	CCWWGG	5 cut(s)	588, 712, 865, 899, 905
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	5 cut(s)	588, 712, 865, 899, 905
FaeI	CATG	4 cut(s)	454, 482, 716, 909
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	4 cut(s)	450, 478, 712, 905
FokI	GGATG	3 cut(s)	317, 653, 842
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	514
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	904
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	4 cut(s)	454, 482, 716, 909
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	5 cut(s)	47, 236, 257, 327, 454
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	4 cut(s)	34, 68, 294, 415
Hpy188III	TCNNGA	3 cut(s)	251, 341, 451
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	3 cut(s)	116, 193, 284
HpyCH4IV	ACGT	1 cut(s)	772
HpyCH4V	TGCA	3 cut(s)	356, 474, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpySE526I	ACGT	1 cut(s)	772
Hsp92II	CATG	4 cut(s)	454, 482, 716, 909
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	127, 322, 550, 665, 703
LmnI	GCTCC	1 cut(s)	395
LweI	GCATC	2 cut(s)	343, 365
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	2 cut(s)	187, 490
MalI	GATC	5 cut(s)	129, 324, 552, 667, 705
MboI	GATC	5 cut(s)	127, 322, 550, 665, 703
MboII	GAAGA	5 cut(s)	85, 193, 266, 329, 617
MfeI	CAATTG	2 cut(s)	297, 791
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	7 cut(s)	297, 683, 791, 843, 855, 885, 910
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	28, 55, 62, 345, 394, 669, 841
Mox20I	TGGCCA	1 cut(s)	904
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	904
MseI	TTAA	3 cut(s)	216, 738, 916
Msp20I	TGGCCA	1 cut(s)	904
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	4 cut(s)	177, 178, 245, 663
MunI	CAATTG	2 cut(s)	297, 791
MvaI	CCWGG	2 cut(s)	245, 663
MwoI	GCNNNNNNNGC	1 cut(s)	220
NciI	CCSGG	2 cut(s)	177, 178
NcoI	CCATGG	2 cut(s)	712, 905
NdeII	GATC	5 cut(s)	127, 322, 550, 665, 703
NlaIII	CATG	4 cut(s)	454, 482, 716, 909
NlaIV	GGNNCC	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	503
PagI	TCATGA	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	47, 236, 257, 327
PfoI	TCCNGGA	1 cut(s)	661
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	243, 661
PspGI	CCWGG	2 cut(s)	243, 661
PspN4I	GGNNCC	1 cut(s)	719
RsaI	GTAC	5 cut(s)	44, 90, 143, 242, 281
RsaNI	GTAC	5 cut(s)	43, 89, 142, 241, 280
SaqAI	TTAA	3 cut(s)	216, 738, 916
Sau3AI	GATC	5 cut(s)	127, 322, 550, 665, 703
ScaI	AGTACT	2 cut(s)	90, 281
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	4 cut(s)	177, 178, 245, 663
SetI	ASST	8 cut(s)	66, 246, 405, 492, 523, 657, 775, 852
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	343, 365
SfuI	TTCGAA	1 cut(s)	503
SmaI	CCCGGG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SpeI	ACTAGT	1 cut(s)	85
Sse9I	AATT	7 cut(s)	297, 683, 791, 843, 855, 885, 910
SsiI	CCGC	1 cut(s)	680
SspI	AATATT	1 cut(s)	560
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	4 cut(s)	175, 176, 243, 661
StyI	CCWWGG	5 cut(s)	588, 712, 865, 899, 905
TaaI	ACNGT	3 cut(s)	116, 193, 284
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	4 cut(s)	325, 503, 786, 852
TasI	AATT	7 cut(s)	297, 683, 791, 843, 855, 885, 910
TatI	WGTACW	3 cut(s)	88, 141, 279
TfiI	GAWTC	4 cut(s)	47, 236, 257, 327
Tru1I	TTAA	3 cut(s)	216, 738, 916
Tru9I	TTAA	3 cut(s)	216, 738, 916
TscAI	CASTG	2 cut(s)	469, 607
TspDTI	ATGAA	4 cut(s)	319, 439, 657, 742
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	2 cut(s)	469, 607
XapI	RAATTY	3 cut(s)	683, 885, 910
XceI	RCATGY	1 cut(s)	482
XmaI	CCCGGG	1 cut(s)	176
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	2 cut(s)	90, 281
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.