Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009641

Physical Location & Seq

Genomic Coordinates Reverse (-)

80338923 .. 80339915

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTGGTCTTGACATTAACCACAACGGCCTAGTCTGGAGATCAGTTACGAGGAAACCTCCAAAACACTACAAAATGAGCATAAAGTCGTTCTCAAGGCTACAATCAGAGGAAAAGTACGAATCGGGTGAGTTTGAGGTCGGAGGATACAAGTGGAAACTAGTACTCTTCCCCAATGGAAACAAAAACCGTGATGTGAAAGATCACATCTCTCTCTACTTGGAAATGGGTGGAGACAAAGCAATAGAACCCGGGAAGATTGTAACAGTTGATTACAAGTTGTTTTTGCTTAATCGGCACAAGGGGAAAGAATCGTACCTGGTTCTTGAAGATTACAATAAGAGAGAGAAAAAGTACTGTATTTATCGGACAATTGTTGGTGGTTTGGGTGGTTTGGATCGATTCATCCCTCTTCAAGATTTTAGTGATGCATCAAATGGTTATCTCATTGATGACAGATGTGAGTTCGGAGTAGAGGTCTTTGTTTCTGAAACGACAAGAAAAGGCAAAGGAGAGTGTGTATTCATGAGTCTCAACACTGCTATATACAAGCATGTTTGGAAGGTTACTAACTTTTCGAAGTTAGGCGCTCAACCTTATTACTCACTACCATTCACCGCAAACGATCAAAAATATTGCTCATGGAGATTGGTTCTCTATCCCAAGGGACTTATCACTGGAAAGGATAGTCATCTTTCTCTTCTTTTGTATTTGGATGAACCACATAAGCTTCCTCCTGGATCAAAAATACTTGCGGAATTTACTCTACGCATTTTGGATCAAATCCATGGGAACCATCGTTCTGGTAAAGTTAATGCCTGCTGGTTCATTGCCCAACCCACCATACGTGCTTGTGGTTTCGACCAATTGATTACACAAGAAAAAAACGCAAGGTTTTCAATGGATGATACTTGCATAATTGAGGTCGAAATTACTATCCAAGGACTTTCTATGCCAAGAATTTCTACACGCCCTTGGCCATGGAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

330

Amino Acids

37.95

Weight (kDa)

9.03

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 160	1.6e-26	MATH domain
MATH	PF00917	28 - 103	8.5e-06	MATH domain
MATH_2	PF22486	184 - 311	1.9e-21	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g05490 FvH4_2g27890 FvH4_4g21292
rosa_chinensis	RchiOBHm_Chr4g0426991 RchiOBHm_Chr5g0074421
rosa_laevigata	RLG00000007268 RLG00000036474
rosa_multiflora	Rmu_sc0000573.1_g000005 Rmu_sc0000953.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007120 Rroxscaffold_5G00368880
rosa_rugosa	Rorug04G0215400 Rorug05G0431500
rosa_samantha	Rh4AG271000 Rh4BG277200 Rh4CG291900 Rh4DG274400 Rh5AG488800 Rh5BG509500 Rh5CG533300
rosa_wichuraiana	Rw4G023520 Rw5G045320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	618, 755
AclWI	GGATC	3 cut(s)	405, 748, 786
AcoI	YGGCCR	1 cut(s)	977
AcsI	RAATTY	3 cut(s)	758, 960, 985
AfaI	GTAC	4 cut(s)	119, 165, 317, 356
AgsI	TTSAA	3 cut(s)	329, 416, 900
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	318, 736
AloI	GAACNNNNNNTCC	2 cut(s)	784, 816
AluBI	AGCT	1 cut(s)	730
AluI	AGCT	1 cut(s)	730
Alw26I	GTCTC	2 cut(s)	228, 536
AlwI	GGATC	3 cut(s)	405, 748, 786
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	28, 977
ApoI	RAATTY	3 cut(s)	758, 960, 985
AspLEI	GCGC	1 cut(s)	590
AsuC2I	CCSGG	2 cut(s)	252, 253
AsuHPI	GGTGA	2 cut(s)	140, 607
AsuII	TTCGAA	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	979
BccI	CCATC	1 cut(s)	804
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	320, 738
BciVI	GTATCC	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	252, 253
BcoDI	GTCTC	2 cut(s)	228, 536
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	2 cut(s)	32, 161
BfoI	RGCGCY	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	140
BmcAI	AGTACT	2 cut(s)	165, 356
Bme1390I	CCNGG	4 cut(s)	252, 253, 320, 738
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	794
BmrFI	CCNGG	4 cut(s)	252, 253, 320, 738
BmsI	GCATC	2 cut(s)	418, 440
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpmI	CTGGAG	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	252, 253
Bsa29I	ATCGAT	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	6 cut(s)	251, 663, 787, 940, 974, 980
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 504, 534
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	320, 738
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	6 cut(s)	251, 663, 787, 940, 974, 980
BseGI	GGATG	3 cut(s)	405, 721, 910
BseJI	GATNNNNATC	1 cut(s)	690
BseMI	GCAATG	1 cut(s)	828
BseNI	ACTGG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	30, 979
BshVI	ATCGAT	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	681
BsmAI	GTCTC	2 cut(s)	228, 536
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	30, 979
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	578
Bsp143I	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
Bsp19I	CCATGG	2 cut(s)	787, 980
BspACI	CCGC	2 cut(s)	618, 755
BspANI	GGCC	2 cut(s)	30, 979
BspDI	ATCGAT	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	405, 748, 786
BspT104I	TTCGAA	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	828
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	6 cut(s)	251, 663, 787, 940, 974, 980
BssMI	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
BssT1I	CCWWGG	5 cut(s)	663, 787, 940, 974, 980
Bst2UI	CCWGG	2 cut(s)	320, 738
Bst4CI	ACNGT	3 cut(s)	191, 268, 359
Bst6I	CTCTTC	3 cut(s)	173, 417, 705
BstBAI	YACGTR	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	820
BstDSI	CCRYGG	2 cut(s)	787, 980
BstF5I	GGATG	3 cut(s)	405, 721, 910
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	6 cut(s)	44, 205, 400, 628, 743, 781
BstMAI	GTCTC	2 cut(s)	228, 536
BstMBI	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	2 cut(s)	320, 738
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	250, 251, 318, 736
BstXI	CCANNNNNNTGG	1 cut(s)	803
Bsu15I	ATCGAT	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	30, 979
BsuTUI	ATCGAT	1 cut(s)	400
BtgI	CCRYGG	2 cut(s)	787, 980
BtsCI	GGATG	3 cut(s)	405, 721, 910
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	537, 675
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	1 cut(s)	590
Cfr9I	CCCGGG	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	4 cut(s)	118, 164, 316, 355
CviAII	CATG	5 cut(s)	526, 554, 642, 788, 981
CviJI	RGCY	5 cut(s)	5, 30, 100, 730, 979
CviKI_1	RGCY	5 cut(s)	5, 30, 100, 730, 979
CviQI	GTAC	4 cut(s)	118, 164, 316, 355
DpnI	GATC	6 cut(s)	43, 204, 399, 627, 742, 780
DpnII	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
EaeI	YGGCCR	1 cut(s)	977
Eam1104I	CTCTTC	3 cut(s)	173, 417, 705
EarI	CTCTTC	3 cut(s)	173, 417, 705
Eco130I	CCWWGG	5 cut(s)	663, 787, 940, 974, 980
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	318, 736
EcoT14I	CCWWGG	5 cut(s)	663, 787, 940, 974, 980
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	5 cut(s)	663, 787, 940, 974, 980
FaeI	CATG	5 cut(s)	529, 557, 645, 791, 984
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	5 cut(s)	525, 553, 641, 787, 980
FokI	GGATG	3 cut(s)	392, 728, 917
FspBI	CTAG	2 cut(s)	32, 161
GlaI	GCGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	2 cut(s)	30, 979
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	529, 557, 645, 791, 984
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	4 cut(s)	122, 311, 402, 529
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	140, 607
Hpy188I	TCNGA	5 cut(s)	109, 143, 369, 470, 490
Hpy188III	TCNNGA	5 cut(s)	11, 37, 326, 416, 526
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	3 cut(s)	191, 268, 359
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	2 cut(s)	431, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	5 cut(s)	529, 557, 645, 791, 984
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
LweI	GCATC	2 cut(s)	418, 440
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	2 cut(s)	32, 161
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	3 cut(s)	46, 262, 565
MalI	GATC	6 cut(s)	43, 204, 399, 627, 742, 780
MboI	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
MboII	GAAGA	5 cut(s)	160, 268, 341, 404, 692
MfeI	CAATTG	2 cut(s)	372, 866
MlsI	TGGCCA	1 cut(s)	979
MluCI	AATT	7 cut(s)	372, 758, 866, 918, 930, 960, 985
MluNI	TGGCCA	1 cut(s)	979
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	9 cut(s)	45, 69, 103, 130, 137, 420, 469, 744, 916
Mox20I	TGGCCA	1 cut(s)	979
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	979
MseI	TTAA	4 cut(s)	18, 291, 813, 991
Msp20I	TGGCCA	1 cut(s)	979
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	4 cut(s)	252, 253, 320, 738
MunI	CAATTG	2 cut(s)	372, 866
MvaI	CCWGG	2 cut(s)	320, 738
MwoI	GCNNNNNNNGC	1 cut(s)	295
NciI	CCSGG	2 cut(s)	252, 253
NcoI	CCATGG	2 cut(s)	787, 980
NdeII	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
NlaIII	CATG	5 cut(s)	529, 557, 645, 791, 984
NlaIV	GGNNCC	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	578
PagI	TCATGA	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	122, 311, 402
PfoI	TCCNGGA	1 cut(s)	736
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Ppu21I	YACGTR	1 cut(s)	848
Psp6I	CCWGG	2 cut(s)	318, 736
PspGI	CCWGG	2 cut(s)	318, 736
PspN4I	GGNNCC	1 cut(s)	794
RsaI	GTAC	4 cut(s)	119, 165, 317, 356
RsaNI	GTAC	4 cut(s)	118, 164, 316, 355
SaqAI	TTAA	4 cut(s)	18, 291, 813, 991
Sau3AI	GATC	6 cut(s)	41, 202, 397, 625, 740, 778
ScaI	AGTACT	2 cut(s)	165, 356
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	4 cut(s)	252, 253, 320, 738
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	418, 440
SfuI	TTCGAA	1 cut(s)	578
SmaI	CCCGGG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	7 cut(s)	372, 758, 866, 918, 930, 960, 985
SsiI	CCGC	2 cut(s)	618, 755
SspI	AATATT	1 cut(s)	635
SspMI	CTAG	2 cut(s)	32, 161
StyD4I	CCNGG	4 cut(s)	250, 251, 318, 736
StyI	CCWWGG	5 cut(s)	663, 787, 940, 974, 980
TaaI	ACNGT	3 cut(s)	191, 268, 359
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	4 cut(s)	400, 578, 861, 927
TasI	AATT	7 cut(s)	372, 758, 866, 918, 930, 960, 985
TatI	WGTACW	2 cut(s)	163, 354
TfiI	GAWTC	3 cut(s)	122, 311, 402
Tru1I	TTAA	4 cut(s)	18, 291, 813, 991
Tru9I	TTAA	4 cut(s)	18, 291, 813, 991
TscAI	CASTG	2 cut(s)	544, 682
TspDTI	ATGAA	4 cut(s)	394, 514, 732, 817
TspMI	CCCGGG	1 cut(s)	251
TspRI	CASTG	2 cut(s)	544, 682
XapI	RAATTY	3 cut(s)	758, 960, 985
XceI	RCATGY	1 cut(s)	557
XmaI	CCCGGG	1 cut(s)	251
XspI	CTAG	2 cut(s)	32, 161
ZrmI	AGTACT	2 cut(s)	165, 356
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.