Rroxscaffold_1G00007110

DnaJ homolog, subfamily C, member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0021634
Physical Location & Seq
Forward (+)
9106219 .. 9106982
764 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00007110.1

Sequence Viewer

Length: 657 bp
ATGGACACACTGGTAGATCATTATAAGGTTCTGGGTCTACCGTCTGGGGAGGAAGGCACTAAGCTCACACAGATAGAGATTTCAAAGGCATATAGAGCAAAGGCTTTGGATTTGCACCCAGATAAGAGGCCAGACGATCCCCATGCCAATGCAAACTTCCAAAGGCTCAAGTCATCATATGAAATACTCAAGGATCGAAATGCCCGAAAACTGTTTGATGCAAGTCTAAGAGCCAAGAGGGAAGAACTGCATCATCAGAATCGCCTGCATGAGCAACACAACAATGCCACCAAGCAAGGAAGGATGTTTTCCGGTGATGGCAGACATTGTCACGCAAAGCTAGCGTCTGATCTCCAAGCGAGGGCGAGAGAACGGAGATGGGCTCCCACATGGAGAGAAGCAAGAGGAAGACGAGCTGCTGTCAATGGTCCTAGAGAAGAGTTGTTTGGTGATTTGGAAGGAATACTAAAGAGAGTGCAGCAGCAGCAGTATCACGGCCAGTGGCAATGCGATGCAAAGCCAGAGAGGTGTTCTTTCGAGCCAGAGAGATATTCTTCGATCTCAAAGAAAGAGAATGAGGAGATGCTAAGAGGAGAATATCATCTCAAGCTGTTTCTGATTCTGTTGTTCTTCTTTGCTTTATGGTCTATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

218

Amino Acids

25.59

Weight (kDa)

9.44

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 73 1.2e-16 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021634)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000573.1_g000004 Rmu_sc0030155.1_g000001
rosa_roxburghii Rroxscaffold_1G00007110
rosa_rugosa Rorug05G0431500
rosa_samantha Rh5DG522400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AccI GTMKAC 1 cut(s) 37
AclWI GGATC 2 cut(s) 131, 201
AcoI YGGCCR 1 cut(s) 496
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 1 cut(s) 84
AjuI GAANNNNNNNTTGG 4 cut(s) 140, 172, 429, 461
AluBI AGCT 4 cut(s) 64, 340, 416, 610
AluI AGCT 4 cut(s) 64, 340, 416, 610
AlwI GGATC 2 cut(s) 131, 201
AoxI GGCC 2 cut(s) 128, 496
ApeKI GCWGC 4 cut(s) 416, 478, 481, 484
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 2 cut(s) 326, 461
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 4 cut(s) 403, 490, 493, 496
BccI CCATC 2 cut(s) 311, 372
BceAI ACGGC 1 cut(s) 511
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BfaI CTAG 3 cut(s) 341, 432, 655
BisI GCNGC 4 cut(s) 417, 479, 482, 485
BlsI GCNGC 4 cut(s) 418, 480, 483, 486
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 384
BmsI GCATC 4 cut(s) 208, 259, 502, 573
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpuEI CTTGAG 3 cut(s) 152, 173, 590
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 15, 499
Bse3DI GCAATG 1 cut(s) 512
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMI GCAATG 1 cut(s) 512
BseNI ACTGG 2 cut(s) 15, 499
BseRI GAGGAG 2 cut(s) 593, 606
BseXI GCAGC 4 cut(s) 403, 490, 493, 496
BsgI GTGCAG 1 cut(s) 497
BshFI GGCC 2 cut(s) 130, 498
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 361
BsnI GGCC 2 cut(s) 130, 498
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 5 cut(s) 16, 136, 193, 349, 558
BspANI GGCC 2 cut(s) 130, 498
BspLI GGNNCC 1 cut(s) 384
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 131, 201
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 2 cut(s) 15, 499
BssMI GATC 5 cut(s) 16, 136, 193, 349, 558
Bst4CI ACNGT 2 cut(s) 42, 213
Bst6I CTCTTC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 266, 342
BstDEI CTNAG 3 cut(s) 60, 227, 587
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 5 cut(s) 19, 139, 196, 352, 561
BstMBI GATC 5 cut(s) 16, 136, 193, 349, 558
BstMWI GCNNNNNNNGC 3 cut(s) 95, 341, 484
BstV1I GCAGC 4 cut(s) 403, 490, 493, 496
BstV2I GAAGAC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 130, 498
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 8, 506
Cac8I GCNNGC 2 cut(s) 266, 342
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 333
CviAII CATG 3 cut(s) 143, 269, 390
DdeI CTNAG 3 cut(s) 60, 227, 587
DpnI GATC 5 cut(s) 18, 138, 195, 351, 560
DpnII GATC 5 cut(s) 16, 136, 193, 349, 558
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 3 cut(s) 146, 272, 393
FatI CATG 3 cut(s) 142, 268, 389
FauNDI CATATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 4 cut(s) 417, 479, 482, 485
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 4 cut(s) 417, 479, 482, 485
FspBI CTAG 3 cut(s) 341, 432, 655
GluI GCNGC 4 cut(s) 417, 479, 482, 485
HaeIII GGCC 2 cut(s) 130, 498
HapII CCGG 1 cut(s) 312
HgaI GACGC 1 cut(s) 333
Hin1II CATG 3 cut(s) 146, 272, 393
HinfI GANTC 2 cut(s) 259, 619
HpaII CCGG 1 cut(s) 312
HphI GGTGA 2 cut(s) 326, 461
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 258, 349, 618
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 47, 294, 452
HpyCH4III ACNGT 2 cut(s) 42, 213
HpyCH4V TGCA 7 cut(s) 115, 152, 221, 250, 268, 478, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 341, 484
HpyF3I CTNAG 3 cut(s) 60, 227, 587
Hsp92II CATG 3 cut(s) 146, 272, 393
Kzo9I GATC 5 cut(s) 16, 136, 193, 349, 558
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 9 cut(s) 17, 30, 132, 144, 278, 325, 512, 534, 555
Lsp1109I GCAGC 4 cut(s) 403, 490, 493, 496
LweI GCATC 4 cut(s) 208, 259, 502, 573
MaeI CTAG 3 cut(s) 341, 432, 655
MaeIII GTNAC 1 cut(s) 329
MalI GATC 5 cut(s) 18, 138, 195, 351, 560
MboI GATC 5 cut(s) 16, 136, 193, 349, 558
MboII GAAGA 5 cut(s) 254, 420, 449, 546, 622
MhlI GDGCHC 1 cut(s) 385
MnlI CCTC 8 cut(s) 43, 120, 231, 354, 398, 519, 571, 584
MslI CAYNNNNRTG 2 cut(s) 147, 282
MspI CCGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 95, 341, 484
NdeI CATATG 1 cut(s) 178
NdeII GATC 5 cut(s) 16, 136, 193, 349, 558
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 3 cut(s) 146, 272, 393
NlaIV GGNNCC 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PfeI GAWTC 2 cut(s) 259, 619
PflFI GACNNNGTC 1 cut(s) 327
PkrI GCNGC 4 cut(s) 418, 480, 483, 486
PsiI TTATAA 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 384
PspPI GGNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 327
RseI CAYNNNNRTG 2 cut(s) 147, 282
SatI GCNGC 4 cut(s) 417, 479, 482, 485
Sau3AI GATC 5 cut(s) 16, 136, 193, 349, 558
Sau96I GGNCC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 385
SetI ASST 6 cut(s) 30, 66, 342, 418, 530, 612
SfaNI GCATC 4 cut(s) 208, 259, 502, 573
SinI GGWCC 1 cut(s) 428
SmiMI CAYNNNNRTG 2 cut(s) 147, 282
SmlI CTYRAG 3 cut(s) 167, 188, 605
SmoI CTYRAG 3 cut(s) 167, 188, 605
SspMI CTAG 3 cut(s) 341, 432, 655
TaaI ACNGT 2 cut(s) 42, 213
TaqI TCGA 3 cut(s) 196, 537, 557
TfiI GAWTC 2 cut(s) 259, 619
TscAI CASTG 2 cut(s) 15, 506
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 4 cut(s) 416, 478, 481, 484
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 2 cut(s) 15, 506
Tth111I GACNNNGTC 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 3 cut(s) 341, 432, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.