Rmu_sc0000579.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000579.1
OG0025484
Physical Location & Seq
Forward (+)
53844 .. 54553
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000579.1_g000010.1.cds

Sequence Viewer

Length: 624 bp
atggcatcattggaggctagggatccggccagaattcatcaccagtactcggtgcaggtgactttgggttcggcaaggcttgcagctttgcaagcagaccagtggtactataaggccaagttcccaaggttcaaagggactattgctataatatggcgtatcaagtttggtttgacgatacaagatgtaggagatcgatttgtgtttcaatttgagtgtgcatctgaatgtaataagatattgcatggaggaccatggttctataggaatactatgttggtgctcaaagagtatgatggaataggatcagtggtggctgtccctttgaatttgttggaaatgtgggtggtgatcaaatggctaccagtagggcttcgcaataaggcggcggtgcatctagtcggtgctactcttggccggggtttttggaagctttttgagtttttgccagaggtggtaccggaattagcgtttatctatgaaaaggtgaaggggttctatcagagctgtggcctctttgtacatggggaggcagggtgtgatggtctcttaatgaaagagaaggatgaacttcttgcgcagttgcagactgcgattgttgggctgtcattgtcggatagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

207

Amino Acids

23.31

Weight (kDa)

8.31

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025484)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000579.1_g000010 Rmu_sc0002177.1_g000005 Rmu_sc0011237.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
Acc16I TGCGCA 1 cut(s) 579
Acc36I ACCTGC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 1 cut(s) 457
AciI CCGC 2 cut(s) 386, 389
AclWI GGATC 3 cut(s) 17, 30, 313
AcoI YGGCCR 2 cut(s) 27, 415
AcsI RAATTY 2 cut(s) 33, 328
AfaI GTAC 4 cut(s) 47, 107, 459, 522
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 133, 209, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 86, 433, 507, 621
AluI AGCT 4 cut(s) 86, 433, 507, 621
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 3 cut(s) 17, 30, 313
AoxI GGCC 4 cut(s) 27, 114, 415, 511
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 33, 328
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 1 cut(s) 494
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 4 cut(s) 32, 70, 361, 499
AvaII GGWCC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 290, 536
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 2 cut(s) 18, 398
BfmI CTRYAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 84, 387
BlsI GCNGC 2 cut(s) 85, 388
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 24, 459
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 14, 230, 403
BpuMI CCSGG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 125, 254, 418
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 43, 100, 365
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 125, 254, 418
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 43, 100, 365
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 4 cut(s) 29, 116, 417, 513
BshNI GGYRCC 1 cut(s) 457
BshVI ATCGAT 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 26, 418, 461
BslFI GGGAC 2 cut(s) 151, 305
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 151, 305
BsnI GGCC 4 cut(s) 29, 116, 417, 513
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 4 cut(s) 22, 193, 305, 351
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 386, 389
BspANI GGCC 4 cut(s) 29, 116, 417, 513
BspDI ATCGAT 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 24, 459
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 3 cut(s) 17, 30, 313
BspT107I GGYRCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 3 cut(s) 43, 100, 365
BssECI CCNNGG 3 cut(s) 125, 254, 418
BssMI GATC 4 cut(s) 22, 193, 305, 351
BssT1I CCWWGG 2 cut(s) 125, 254
BstAPI GCANNNNNTGC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 81, 93
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 4 cut(s) 25, 196, 308, 354
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 22, 193, 305, 351
BstMWI GCNNNNNNNGC 2 cut(s) 80, 92
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu15I ATCGAT 1 cut(s) 196
BsuRI GGCC 4 cut(s) 29, 116, 417, 513
BsuTUI ATCGAT 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 107, 315
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 81, 93
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 251
ClaI ATCGAT 1 cut(s) 196
Csp6I GTAC 4 cut(s) 46, 106, 458, 521
CviAII CATG 3 cut(s) 245, 255, 524
CviQI GTAC 4 cut(s) 46, 106, 458, 521
DpnI GATC 4 cut(s) 24, 195, 307, 353
DpnII GATC 4 cut(s) 22, 193, 305, 351
EaeI YGGCCR 2 cut(s) 27, 415
Eco130I CCWWGG 2 cut(s) 125, 254
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 125, 254
ErhI CCWWGG 2 cut(s) 125, 254
FaeI CATG 3 cut(s) 248, 258, 527
FaqI GGGAC 2 cut(s) 151, 305
FatI CATG 3 cut(s) 244, 254, 523
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 84, 387
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 2 cut(s) 84, 387
FspBI CTAG 2 cut(s) 18, 398
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 1 cut(s) 579
GluI GCNGC 2 cut(s) 84, 387
HaeIII GGCC 4 cut(s) 29, 116, 417, 513
HapII CCGG 3 cut(s) 26, 418, 461
HhaI GCGC 1 cut(s) 580
Hin1II CATG 3 cut(s) 248, 258, 527
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 431
HpaII CCGG 3 cut(s) 26, 418, 461
HphI GGTGA 4 cut(s) 32, 70, 361, 499
Hpy188I TCNGA 3 cut(s) 226, 504, 616
HpyAV CCTTC 2 cut(s) 484, 556
HpyCH4V TGCA 7 cut(s) 55, 83, 91, 221, 244, 394, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 92
Hsp92II CATG 3 cut(s) 248, 258, 527
HspAI GCGC 1 cut(s) 578
KpnI GGTACC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 4 cut(s) 22, 193, 305, 351
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 14, 230, 403
MaeI CTAG 2 cut(s) 18, 398
MaeIII GTNAC 1 cut(s) 58
MalI GATC 4 cut(s) 24, 195, 307, 353
MboI GATC 4 cut(s) 22, 193, 305, 351
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 33, 209, 328, 464
MmeI TCCRAC 2 cut(s) 315, 594
MnlI CCTC 5 cut(s) 7, 242, 445, 523, 524
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 3 cut(s) 26, 418, 461
MspR9I CCNGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 80, 92
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 254
NdeII GATC 4 cut(s) 22, 193, 305, 351
NlaIII CATG 3 cut(s) 248, 258, 527
NlaIV GGNNCC 2 cut(s) 24, 459
NmuCI GTSAC 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 494
PkrI GCNGC 2 cut(s) 85, 388
PspN4I GGNNCC 2 cut(s) 24, 459
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 4 cut(s) 47, 107, 459, 522
RsaNI GTAC 4 cut(s) 46, 106, 458, 521
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 84, 387
Sau3AI GATC 4 cut(s) 22, 193, 305, 351
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 60, 88, 131, 435, 456, 489, 509, 623
SfaNI GCATC 3 cut(s) 14, 230, 403
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 4 cut(s) 33, 209, 328, 464
SsiI CCGC 2 cut(s) 386, 389
SspMI CTAG 2 cut(s) 18, 398
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 125, 254
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 33, 209, 328, 464
TatI WGTACW 2 cut(s) 45, 520
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 2 cut(s) 107, 315
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 26, 495, 569, 582
TspRI CASTG 2 cut(s) 107, 315
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 33, 328
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 2 cut(s) 18, 398
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.