Rmu_sc0002177.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002177.1
OG0025484
Physical Location & Seq
Reverse (-)
20182 .. 21118
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002177.1_g000005.1.cds

Sequence Viewer

Length: 840 bp
atggcctcctccacagctagccttacggcagcccttcctcatgctgattctgcccgagtttttcttggatcggtggggctggaagctctacatgcaaatcgatcgctggtacatggtggggagactctttggactcaaagccaagtttcccagtttcataggtacaattcccaacatctggaggatcaaatctggaataacatgctcgtactcggagaatttgatggaatgggattagtgtcggaggtccctttgaatctcttggagacctgggttgcggttaaggggctgcctttaatcctacgcaacaaaacggccttgcatctggtaggttctacgattggacatgtacttcgtttcgatcagactgcccttcataggaaggatgaggaacagctgatcatacttatatttgatgtgcgaagtcgagtccgtttctggaaattgtttgagttctcgccggtggtggaacctgaattgcattatgaaaatatcaagggttgctgcagaaattgtggtctttttaaacatgatgcattgggttgtgattacttgttggtgaaggagaaagaagaaatcctagcaaagccgcagccaaaaccgccggcagcagctttggctggactgaccttggcttcaagttcgcaaatcagtaaccctagacaggaggtagggggaagcagatcgatcaggttgaaaagaatagtcgttctctggttcaaattggaatggcgtctgttgctcccaccggcagcactactgctgatgaaaacaatctgcagcccaagagtgccgatactcaacctgccccgagtcaagtttttgccggtcttgacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

279

Amino Acids

31.24

Weight (kDa)

9.14

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025484)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000579.1_g000010 Rmu_sc0002177.1_g000005 Rmu_sc0011237.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 813
AccB7I CCANNNNNTGG 1 cut(s) 178
AciI CCGC 3 cut(s) 278, 590, 602
AclWI GGATC 2 cut(s) 76, 192
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 4 cut(s) 111, 164, 210, 351
AfiI CCNNNNNNNGG 3 cut(s) 178, 378, 664
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 4 cut(s) 256, 639, 697, 721
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 4 cut(s) 17, 86, 397, 614
AluI AGCT 4 cut(s) 17, 86, 397, 614
Alw26I GTCTC 2 cut(s) 116, 260
AlwI GGATC 2 cut(s) 76, 192
Ama87I CYCGRG 2 cut(s) 54, 810
AoxI GGCC 2 cut(s) 3, 315
ApeKI GCWGC 8 cut(s) 29, 289, 504, 592, 608, 611, 752, 780
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 571
AsuNHI GCTAGC 1 cut(s) 17
AvaI CYCGRG 2 cut(s) 54, 810
AvaII GGWCC 1 cut(s) 247
BbvI GCAGC 8 cut(s) 41, 276, 491, 604, 620, 623, 764, 792
BccI CCATC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 42, 330
BcgI CGANNNNNNTGC 4 cut(s) 84, 118, 350, 384
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 2 cut(s) 116, 260
BfaI CTAG 3 cut(s) 18, 581, 660
BfmI CTRYAG 2 cut(s) 505, 778
BfuAI ACCTGC 1 cut(s) 813
BisI GCNGC 9 cut(s) 30, 290, 505, 590, 593, 609, 612, 753, 781
BlsI GCNGC 9 cut(s) 31, 291, 506, 591, 594, 610, 613, 754, 782
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 2 cut(s) 54, 810
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 249, 471
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 331, 523
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 200
Bsa29I ATCGAT 2 cut(s) 100, 686
BsaHI GRCGYC 1 cut(s) 733
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 270, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 378, 664
Bse118I RCCGGY 4 cut(s) 460, 604, 748, 826
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 2 cut(s) 100, 686
BseDI CCNNGG 2 cut(s) 270, 630
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 178, 378, 664
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 8 cut(s) 41, 276, 491, 604, 620, 623, 764, 792
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 5, 317
BshVI ATCGAT 2 cut(s) 100, 686
BsiEI CGRYCG 1 cut(s) 104
BsiHKCI CYCGRG 2 cut(s) 54, 810
BsiSI CCGG 4 cut(s) 461, 605, 749, 827
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 3 cut(s) 178, 378, 664
BsmAI GTCTC 2 cut(s) 116, 260
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 5, 317
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 2 cut(s) 54, 810
Bsp143I GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
BspACI CCGC 3 cut(s) 278, 590, 602
BspANI GGCC 2 cut(s) 5, 317
BspDI ATCGAT 2 cut(s) 100, 686
BspLI GGNNCC 2 cut(s) 249, 471
BspMAI CTGCAG 2 cut(s) 509, 782
BspMI ACCTGC 1 cut(s) 813
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 76, 192
BspTNI GGTCTC 1 cut(s) 260
BsrFI RCCGGY 4 cut(s) 460, 604, 748, 826
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 4 cut(s) 460, 604, 748, 826
BssECI CCNNGG 2 cut(s) 270, 630
BssMI GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 733
BstC8I GCNNGC 2 cut(s) 19, 606
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 7 cut(s) 71, 104, 187, 364, 402, 686, 690
BstMAI GTCTC 2 cut(s) 116, 260
BstMBI GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 5 cut(s) 50, 92, 601, 617, 739
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 3 cut(s) 95, 205, 350
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 505, 778
BstV1I GCAGC 8 cut(s) 41, 276, 491, 604, 620, 623, 764, 792
Bsu15I ATCGAT 2 cut(s) 100, 686
BsuRI GGCC 2 cut(s) 5, 317
BsuTUI ATCGAT 2 cut(s) 100, 686
BtsCI GGATG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 813
Cac8I GCNNGC 2 cut(s) 19, 606
Cfr10I RCCGGY 4 cut(s) 460, 604, 748, 826
Cfr13I GGNCC 1 cut(s) 247
ClaI ATCGAT 2 cut(s) 100, 686
CseI GACGC 1 cut(s) 722
Csp6I GTAC 4 cut(s) 110, 163, 209, 350
CviAII CATG 7 cut(s) 41, 92, 113, 202, 347, 530, 837
CviQI GTAC 4 cut(s) 110, 163, 209, 350
DpnI GATC 7 cut(s) 70, 103, 186, 363, 401, 685, 689
DpnII GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
DraI TTTAAA 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 247
Eco88I CYCGRG 2 cut(s) 54, 810
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 7 cut(s) 44, 95, 116, 205, 350, 533, 840
FaqI GGGAC 1 cut(s) 233
FatI CATG 7 cut(s) 40, 91, 112, 201, 346, 529, 836
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 9 cut(s) 30, 290, 505, 590, 593, 609, 612, 753, 781
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 9 cut(s) 30, 290, 505, 590, 593, 609, 612, 753, 781
FspBI CTAG 3 cut(s) 18, 581, 660
GluI GCNGC 9 cut(s) 30, 290, 505, 590, 593, 609, 612, 753, 781
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 2 cut(s) 5, 317
HapII CCGG 4 cut(s) 461, 605, 749, 827
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 7 cut(s) 44, 95, 116, 205, 350, 533, 840
HinfI GANTC 6 cut(s) 47, 124, 133, 256, 429, 813
HpaII CCGG 4 cut(s) 461, 605, 749, 827
HphI GGTGA 1 cut(s) 571
Hpy188I TCNGA 3 cut(s) 215, 244, 366
Hpy188III TCNNGA 4 cut(s) 179, 193, 439, 832
HpyAV CCTTC 4 cut(s) 44, 376, 383, 556
HpyCH4V TGCA 6 cut(s) 95, 322, 481, 507, 536, 780
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 92, 601, 617, 739
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 7 cut(s) 44, 95, 116, 205, 350, 533, 840
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
LmnI GCTCC 1 cut(s) 747
Lsp1109I GCAGC 8 cut(s) 41, 276, 491, 604, 620, 623, 764, 792
LweI GCATC 2 cut(s) 331, 523
MaeI CTAG 3 cut(s) 18, 581, 660
MaeIII GTNAC 1 cut(s) 653
MalI GATC 7 cut(s) 70, 103, 186, 363, 401, 685, 689
MboI GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
MboII GAAGA 1 cut(s) 584
MluCI AATT 6 cut(s) 166, 218, 443, 476, 511, 722
MlyI GAGTC 4 cut(s) 118, 127, 438, 822
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 7 cut(s) 16, 19, 48, 175, 238, 382, 661
Mph1103I ATGCAT 1 cut(s) 538
MroNI GCCGGC 1 cut(s) 604
MseI TTAA 3 cut(s) 282, 296, 525
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 4 cut(s) 461, 605, 749, 827
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 5 cut(s) 50, 92, 601, 617, 739
NaeI GCCGGC 1 cut(s) 606
NdeII GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
NgoMIV GCCGGC 1 cut(s) 604
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 7 cut(s) 44, 95, 116, 205, 350, 533, 840
NlaIV GGNNCC 2 cut(s) 249, 471
NsiI ATGCAT 1 cut(s) 538
NspI RCATGY 3 cut(s) 95, 205, 350
PciI ACATGT 1 cut(s) 346
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 2 cut(s) 47, 256
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 9 cut(s) 31, 291, 506, 591, 594, 610, 613, 754, 782
Ple19I CGATCG 1 cut(s) 104
PleI GAGTC 4 cut(s) 118, 127, 437, 821
PpsI GAGTC 4 cut(s) 118, 127, 437, 821
PpuMI RGGWCCY 1 cut(s) 247
PscI ACATGT 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 249, 471
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PstI CTGCAG 2 cut(s) 509, 782
PvuI CGATCG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 4 cut(s) 111, 164, 210, 351
RsaNI GTAC 4 cut(s) 110, 163, 209, 350
SaqAI TTAA 3 cut(s) 282, 296, 525
SatI GCNGC 9 cut(s) 30, 290, 505, 590, 593, 609, 612, 753, 781
Sau3AI GATC 7 cut(s) 68, 101, 184, 361, 399, 683, 687
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 4 cut(s) 118, 127, 438, 822
ScrFI CCNGG 1 cut(s) 271
SfaNI GCATC 2 cut(s) 331, 523
SfcI CTRYAG 2 cut(s) 505, 778
SgrAI CRCCGGYG 1 cut(s) 460
SinI GGWCC 1 cut(s) 247
Sse9I AATT 6 cut(s) 166, 218, 443, 476, 511, 722
SsiI CCGC 3 cut(s) 278, 590, 602
SspMI CTAG 3 cut(s) 18, 581, 660
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 630
TaqI TCGA 4 cut(s) 100, 360, 427, 686
TasI AATT 6 cut(s) 166, 218, 443, 476, 511, 722
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 2 cut(s) 47, 256
Tru1I TTAA 3 cut(s) 282, 296, 525
Tru9I TTAA 3 cut(s) 282, 296, 525
TseI GCWGC 8 cut(s) 29, 289, 504, 592, 608, 611, 752, 780
TspDTI ATGAA 4 cut(s) 146, 365, 501, 782
TspGWI ACGGA 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 1 cut(s) 218
XceI RCATGY 3 cut(s) 95, 205, 350
XspI CTAG 3 cut(s) 18, 581, 660
Zsp2I ATGCAT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.