Rmu_sc0000579.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000579.1
OG0025484
Physical Location & Seq
Forward (+)
53844 .. 54553
710 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
atggcatcattggaggctagggatccggccagaattcatcaccagtactcggtgcaggtgactttgggttcggcaaggcttgcagctttgcaagcagaccagtggtactataaggccaagttcccaaggttcaaagggactattgctataatatggcgtatcaagtttggtttgacgatacaagatgtaggagatcgatttgtgtttcaatttgagtgtgcatctgaatgtaataagatattgcatggaggaccatggttctataggaatactatgttggtgctcaaagagtatgatggaataggatcagtggtggctgtccctttgaatttgttggaaatgtgggtggtgatcaaatggctaccagtagggcttcgcaataaggcggcggtgcatctagtcggtgctactcttggccggggtttttggaagctttttgagtttttgccagaggtggtaccggaattagcgtttatctatgaaaaggtgaaggggttctatcagagctgtggcctctttgtacatggggaggcagggtgtgatggtctcttaatgaaagagaaggatgaacttcttgcgcagttgcagactgcgattgttgggctgtcattgtcggatagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

207

Amino Acids

23.31

Weight (kDa)

8.31

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 45 - 98 2.1e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025484)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000579.1_g000010 Rmu_sc0002177.1_g000005 Rmu_sc0011237.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
Acc16I TGCGCA 1 cut(s) 579
Acc36I ACCTGC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 1 cut(s) 457
AciI CCGC 2 cut(s) 386, 389
AclWI GGATC 3 cut(s) 17, 30, 313
AcoI YGGCCR 2 cut(s) 27, 415
AcsI RAATTY 2 cut(s) 33, 328
AfaI GTAC 4 cut(s) 47, 107, 459, 522
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 133, 209, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 86, 433, 507, 621
AluI AGCT 4 cut(s) 86, 433, 507, 621
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 551
AlwI GGATC 3 cut(s) 17, 30, 313
AoxI GGCC 4 cut(s) 27, 114, 415, 511
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 33, 328
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp700I GAANNNNTTC 1 cut(s) 494
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 4 cut(s) 32, 70, 361, 499
AvaII GGWCC 1 cut(s) 251
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 290, 536
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 2 cut(s) 18, 398
BfmI CTRYAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 84, 387
BlsI GCNGC 2 cut(s) 85, 388
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 419
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 24, 459
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 3 cut(s) 14, 230, 403
BpuMI CCSGG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 125, 254, 418
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 43, 100, 365
BseCI ATCGAT 1 cut(s) 196
BseDI CCNNGG 3 cut(s) 125, 254, 418
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 43, 100, 365
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 4 cut(s) 29, 116, 417, 513
BshNI GGYRCC 1 cut(s) 457
BshVI ATCGAT 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 26, 418, 461
BslFI GGGAC 2 cut(s) 151, 305
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 151, 305
BsnI GGCC 4 cut(s) 29, 116, 417, 513
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 4 cut(s) 22, 193, 305, 351
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 386, 389
BspANI GGCC 4 cut(s) 29, 116, 417, 513
BspDI ATCGAT 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 24, 459
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 3 cut(s) 17, 30, 313
BspT107I GGYRCC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 551
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 3 cut(s) 43, 100, 365
BssECI CCNNGG 3 cut(s) 125, 254, 418
BssMI GATC 4 cut(s) 22, 193, 305, 351
BssT1I CCWWGG 2 cut(s) 125, 254
BstAPI GCANNNNNTGC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 81, 93
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 571
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 4 cut(s) 25, 196, 308, 354
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 4 cut(s) 22, 193, 305, 351
BstMWI GCNNNNNNNGC 2 cut(s) 80, 92
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu15I ATCGAT 1 cut(s) 196
BsuRI GGCC 4 cut(s) 29, 116, 417, 513
BsuTUI ATCGAT 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 107, 315
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 81, 93
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 251
ClaI ATCGAT 1 cut(s) 196
Csp6I GTAC 4 cut(s) 46, 106, 458, 521
CviAII CATG 3 cut(s) 245, 255, 524
CviQI GTAC 4 cut(s) 46, 106, 458, 521
DpnI GATC 4 cut(s) 24, 195, 307, 353
DpnII GATC 4 cut(s) 22, 193, 305, 351
EaeI YGGCCR 2 cut(s) 27, 415
Eco130I CCWWGG 2 cut(s) 125, 254
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 125, 254
ErhI CCWWGG 2 cut(s) 125, 254
FaeI CATG 3 cut(s) 248, 258, 527
FaqI GGGAC 2 cut(s) 151, 305
FatI CATG 3 cut(s) 244, 254, 523
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 84, 387
FokI GGATG 1 cut(s) 578
Fsp4HI GCNGC 2 cut(s) 84, 387
FspBI CTAG 2 cut(s) 18, 398
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 1 cut(s) 579
GluI GCNGC 2 cut(s) 84, 387
HaeIII GGCC 4 cut(s) 29, 116, 417, 513
HapII CCGG 3 cut(s) 26, 418, 461
HhaI GCGC 1 cut(s) 580
Hin1II CATG 3 cut(s) 248, 258, 527
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 431
HpaII CCGG 3 cut(s) 26, 418, 461
HphI GGTGA 4 cut(s) 32, 70, 361, 499
Hpy188I TCNGA 3 cut(s) 226, 504, 616
HpyAV CCTTC 2 cut(s) 484, 556
HpyCH4V TGCA 7 cut(s) 55, 83, 91, 221, 244, 394, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 92
Hsp92II CATG 3 cut(s) 248, 258, 527
HspAI GCGC 1 cut(s) 578
KpnI GGTACC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 4 cut(s) 22, 193, 305, 351
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 3 cut(s) 14, 230, 403
MaeI CTAG 2 cut(s) 18, 398
MaeIII GTNAC 1 cut(s) 58
MalI GATC 4 cut(s) 24, 195, 307, 353
MboI GATC 4 cut(s) 22, 193, 305, 351
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 33, 209, 328, 464
MmeI TCCRAC 2 cut(s) 315, 594
MnlI CCTC 5 cut(s) 7, 242, 445, 523, 524
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 3 cut(s) 26, 418, 461
MspR9I CCNGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 80, 92
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 254
NdeII GATC 4 cut(s) 22, 193, 305, 351
NlaIII CATG 3 cut(s) 248, 258, 527
NlaIV GGNNCC 2 cut(s) 24, 459
NmuCI GTSAC 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 494
PkrI GCNGC 2 cut(s) 85, 388
PspN4I GGNNCC 2 cut(s) 24, 459
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 4 cut(s) 47, 107, 459, 522
RsaNI GTAC 4 cut(s) 46, 106, 458, 521
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 2 cut(s) 84, 387
Sau3AI GATC 4 cut(s) 22, 193, 305, 351
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 60, 88, 131, 435, 456, 489, 509, 623
SfaNI GCATC 3 cut(s) 14, 230, 403
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 4 cut(s) 33, 209, 328, 464
SsiI CCGC 2 cut(s) 386, 389
SspMI CTAG 2 cut(s) 18, 398
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 125, 254
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 33, 209, 328, 464
TatI WGTACW 2 cut(s) 45, 520
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 2 cut(s) 107, 315
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 26, 495, 569, 582
TspRI CASTG 2 cut(s) 107, 315
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 2 cut(s) 33, 328
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 2 cut(s) 18, 398
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.