Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0023050

Physical Location & Seq

Genomic Coordinates Reverse (-)

112362 .. 116600

Gene Structure 4239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000595.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgaattgccgcgtcgagtccagcgacttcaaaaaggtagcagccgactgttacttctggaagcttcacgcggaaatcgaagacctccacttgttaatggacccgaaggactttctccggctcaagaaccagttgaagatcaaaacggtggacgatacaaagtcgttgtgctttagatcgaagggactggtggagatcaccaagctgtgtacggacttgaagcataaggtaccaaacgtgttgggagtggaggtggacccgatgggcgggccaaggatccaggaggcggcgatctgctgcaggcgatgcagactatcaagtcagcgacgccggagtcaccagtccggtagccggattccgtcgccggtcgccggagttcggggccggtcattgtcgaaggagacgcgcagctgccacgtcggaagtgaagagaatgtggctgacgtcaaggttggacgcgcagaaacagacgcggagaagagggagactggagcgcacgaacgaatgagtaagctccagctggcaaccgcgtctgcatcttttttgcacctagcgacagtgagtgggacacgtggcatgcagccgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

196

Amino Acids

21.83

Weight (kDa)

9.38

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023050)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000595.1_g000021
rosa_samantha	Rh2BG182400 Rh3CG192600 Rh3CG199800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	318, 333
AatII	GACGTC	1 cut(s)	447
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
AciI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
AclWI	GGATC	2 cut(s)	271, 284
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	2 cut(s)	328, 444
AfaI	GTAC	2 cut(s)	211, 231
AfiI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
AflIII	ACRYGT	2 cut(s)	237, 569
AgsI	TTSAA	3 cut(s)	31, 136, 220
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	64, 205, 411, 514, 520
AluI	AGCT	5 cut(s)	64, 205, 411, 514, 520
Alw26I	GTCTC	2 cut(s)	395, 479
AlwI	GGATC	2 cut(s)	271, 284
AoxI	GGCC	2 cut(s)	269, 382
ApeKI	GCWGC	5 cut(s)	41, 297, 408, 411, 580
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	408, 461, 496
AspS9I	GGNCC	4 cut(s)	100, 256, 269, 382
AsuHPI	GGTGA	2 cut(s)	190, 329
AvaII	GGWCC	2 cut(s)	100, 256
BamHI	GGATCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	53, 284, 398, 420
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	395, 479
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
BlsI	GCNGC	7 cut(s)	11, 43, 289, 299, 410, 413, 582
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	100, 256
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	4 cut(s)	100, 256, 269, 382
BmiI	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	296, 545
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	500, 510
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	328, 444
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
Bse118I	RCCGGY	2 cut(s)	364, 384
Bse1I	ACTGG	4 cut(s)	130, 192, 340, 493
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
BseNI	ACTGG	4 cut(s)	130, 192, 340, 493
BseXI	GCAGC	4 cut(s)	53, 284, 398, 420
Bsh1236I	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	271, 384
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
BslFI	GGGAC	2 cut(s)	198, 580
BslI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
BsmAI	GTCTC	2 cut(s)	395, 479
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	198, 580
BsnI	GGCC	2 cut(s)	271, 384
Bsp143I	GATC	5 cut(s)	138, 176, 195, 276, 291
BspACI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
BspANI	GGCC	2 cut(s)	271, 384
BspFNI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BspLI	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	2 cut(s)	271, 284
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	2 cut(s)	364, 384
BsrI	ACTGG	4 cut(s)	130, 192, 340, 493
BssAI	RCCGGY	2 cut(s)	364, 384
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	5 cut(s)	138, 176, 195, 276, 291
BssNI	GRCGYC	2 cut(s)	328, 444
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	50, 148, 559
Bst6I	CTCTTC	2 cut(s)	423, 473
BstACI	GRCGYC	2 cut(s)	328, 444
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	269, 302, 522, 578
BstFNI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BstHHI	GCGC	3 cut(s)	408, 461, 496
BstKTI	GATC	5 cut(s)	141, 179, 198, 279, 294
BstMAI	GTCTC	2 cut(s)	395, 479
BstMBI	GATC	5 cut(s)	138, 176, 195, 276, 291
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BstV1I	GCAGC	4 cut(s)	53, 284, 398, 420
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	271, 384
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	4 cut(s)	269, 302, 522, 578
CfoI	GCGC	3 cut(s)	408, 461, 496
Cfr10I	RCCGGY	2 cut(s)	364, 384
Cfr13I	GGNCC	4 cut(s)	100, 256, 269, 382
CseI	GACGC	5 cut(s)	336, 412, 465, 479, 519
Csp6I	GTAC	2 cut(s)	210, 230
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	2 cut(s)	210, 230
DpnI	GATC	5 cut(s)	140, 178, 197, 278, 293
DpnII	GATC	5 cut(s)	138, 176, 195, 276, 291
DrdI	GACNNNNNNGTC	2 cut(s)	318, 333
DseDI	GACNNNNNNGTC	2 cut(s)	318, 333
Eam1104I	CTCTTC	2 cut(s)	423, 473
EarI	CTCTTC	2 cut(s)	423, 473
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	100, 256
Eco72I	CACGTG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	580
FaiI	YATR	2 cut(s)	225, 578
FaqI	GGGAC	2 cut(s)	198, 580
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
Fsp4HI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	3 cut(s)	407, 460, 495
GluI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
GsuI	CTGGAG	2 cut(s)	500, 510
HaeIII	GGCC	2 cut(s)	271, 384
HapII	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
HgaI	GACGC	5 cut(s)	336, 412, 465, 479, 519
HhaI	GCGC	3 cut(s)	408, 461, 496
Hin1I	GRCGYC	2 cut(s)	328, 444
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	3 cut(s)	406, 459, 494
HinP1I	GCGC	3 cut(s)	406, 459, 494
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	17, 334, 355
HpaII	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
HphI	GGTGA	2 cut(s)	190, 329
Hpy166II	GTNNAC	3 cut(s)	151, 210, 256
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	2 cut(s)	58, 124
Hpy8I	GTNNAC	3 cut(s)	151, 210, 256
Hpy99I	CGWCG	4 cut(s)	17, 330, 364, 422
HpyAV	CCTTC	3 cut(s)	100, 175, 391
HpyCH4III	ACNGT	3 cut(s)	50, 148, 559
HpyCH4IV	ACGT	4 cut(s)	237, 417, 444, 571
HpyCH4V	TGCA	5 cut(s)	300, 309, 536, 547, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpySE526I	ACGT	4 cut(s)	237, 417, 444, 571
Hsp92I	GRCGYC	2 cut(s)	328, 444
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	3 cut(s)	406, 459, 494
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	138, 176, 195, 276, 291
LmnI	GCTCC	2 cut(s)	491, 519
Lsp1109I	GCAGC	4 cut(s)	53, 284, 398, 420
LweI	GCATC	2 cut(s)	296, 545
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	4 cut(s)	237, 417, 444, 571
MaeIII	GTNAC	2 cut(s)	50, 335
MalI	GATC	5 cut(s)	140, 178, 197, 278, 293
MboI	GATC	5 cut(s)	138, 176, 195, 276, 291
MboII	GAAGA	4 cut(s)	92, 148, 440, 490
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	26, 343
MmeI	TCCRAC	2 cut(s)	400, 433
MnlI	CCTC	4 cut(s)	95, 244, 277, 474
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	411, 520
MspI	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	5 cut(s)	138, 176, 195, 276, 291
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 75
PfeI	GAWTC	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	7 cut(s)	11, 43, 289, 299, 410, 413, 582
PleI	GAGTC	2 cut(s)	25, 342
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
PpsI	GAGTC	2 cut(s)	25, 342
Ppu21I	YACGTR	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
PspPI	GGNCC	4 cut(s)	100, 256, 269, 382
PstI	CTGCAG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	2 cut(s)	411, 520
RsaI	GTAC	2 cut(s)	211, 231
RsaNI	GTAC	2 cut(s)	210, 230
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
Sau3AI	GATC	5 cut(s)	138, 176, 195, 276, 291
Sau96I	GGNCC	4 cut(s)	100, 256, 269, 382
SchI	GAGTC	2 cut(s)	26, 343
ScrFI	CCNGG	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	296, 545
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	2 cut(s)	100, 256
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	50, 148, 559
TaiI	ACGT	4 cut(s)	240, 420, 447, 574
TaqI	TCGA	4 cut(s)	15, 78, 179, 395
TasI	AATT	1 cut(s)	4
TauI	GCSGC	2 cut(s)	12, 290
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	41, 297, 408, 411, 580
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	227, 348
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	2 cut(s)	100, 256
XceI	RCATGY	1 cut(s)	580
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.