Rh2BG182400

Hs1pro-1 N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0023050
Physical Location & Seq
Reverse (-)
16243367 .. 16243696
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG182400.1

Sequence Viewer

Length: 330 bp
ATGAACTGCCGCGTCGAGTCCAGCGACTTCAAAAAGGCCGCCGCCGACTGTTACTTCTGGAAGCTTCTCGCGGAAATCGAAGACCTCCACCTATTAATGGACCCAAAGGACTTTCTCCGGCTCAAGAACCAGTTGAAGATCAAAACGGTGGACGATACAGAGTCGTTTTGCTTTAGATCGAAGGGACTGGTGGAGATCACCAAGCTGTGTACGGACTTGAAGCATAAGGTACCGAACATGTTGGGAGTGGAGGTGGACCCGATGGGGGGGCCAAGGATCCAGGAGGTGGCGATCTGCTGCAGGCGATGCAGACTATCAAGTCGGTGGTGA

Protein Analysis

109

Amino Acids

12.64

Weight (kDa)

8.5

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hs1pro-1_C PF07014 3 - 98 1.1e-42 Hs1pro-1 protein C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023050)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000595.1_g000021
rosa_samantha Rh2BG182400 Rh3CG192600 Rh3CG199800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 2 cut(s) 12, 71
AciI CCGC 4 cut(s) 10, 39, 42, 71
AclWI GGATC 2 cut(s) 271, 284
AfaI GTAC 2 cut(s) 211, 231
AfiI CCNNNNNNNGG 4 cut(s) 97, 265, 266, 286
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 3 cut(s) 31, 136, 220
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 2 cut(s) 64, 205
AluI AGCT 2 cut(s) 64, 205
AlwI GGATC 2 cut(s) 271, 284
AoxI GGCC 2 cut(s) 36, 269
ApeKI GCWGC 1 cut(s) 297
AseI ATTAAT 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 100, 256, 269
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 2 cut(s) 100, 256
BamHI GGATCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 4 cut(s) 10, 39, 42, 298
BlsI GCNGC 4 cut(s) 11, 40, 43, 299
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 100, 256
BmgT120I GGNCC 3 cut(s) 100, 256, 269
BmiI GGNNCC 5 cut(s) 102, 231, 258, 270, 278
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 265, 266, 286
Bse1I ACTGG 2 cut(s) 130, 192
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 4 cut(s) 97, 265, 266, 286
BseNI ACTGG 2 cut(s) 130, 192
BseXI GCAGC 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 12, 71
BshFI GGCC 2 cut(s) 38, 271
BshNI GGYRCC 1 cut(s) 229
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 4 cut(s) 97, 265, 266, 286
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 38, 271
Bsp143I GATC 5 cut(s) 138, 176, 195, 276, 291
BspACI CCGC 4 cut(s) 10, 39, 42, 71
BspANI GGCC 2 cut(s) 38, 271
BspFNI CGCG 2 cut(s) 12, 71
BspLI GGNNCC 5 cut(s) 102, 231, 258, 270, 278
BspMAI CTGCAG 1 cut(s) 302
BspPI GGATC 2 cut(s) 271, 284
BspT107I GGYRCC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 130, 192
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 5 cut(s) 138, 176, 195, 276, 291
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 50, 148
BstAPI GCANNNNNTGC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 302
BstFNI CGCG 2 cut(s) 12, 71
BstKTI GATC 5 cut(s) 141, 179, 198, 279, 294
BstMBI GATC 5 cut(s) 138, 176, 195, 276, 291
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 298
BstUI CGCG 2 cut(s) 12, 71
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 2 cut(s) 38, 271
BtgZI GCGATG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 100, 256, 269
Csp6I GTAC 2 cut(s) 210, 230
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 38, 64, 121, 205, 271
CviKI_1 RGCY 5 cut(s) 38, 64, 121, 205, 271
CviQI GTAC 2 cut(s) 210, 230
DpnI GATC 5 cut(s) 140, 178, 197, 278, 293
DpnII GATC 5 cut(s) 138, 176, 195, 276, 291
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 100, 256
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 1 cut(s) 241
FaiI YATR 2 cut(s) 225, 239
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 4 cut(s) 10, 39, 42, 298
Fsp4HI GCNGC 4 cut(s) 10, 39, 42, 298
GluI GCNGC 4 cut(s) 10, 39, 42, 298
HaeIII GGCC 2 cut(s) 38, 271
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 17, 161
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 3 cut(s) 151, 210, 256
Hpy188III TCNNGA 2 cut(s) 58, 124
Hpy8I GTNNAC 3 cut(s) 151, 210, 256
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 50, 148
HpyCH4V TGCA 2 cut(s) 300, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 241
KpnI GGTACC 1 cut(s) 233
Kzo9I GATC 5 cut(s) 138, 176, 195, 276, 291
LpnPI CCDG 8 cut(s) 34, 43, 131, 143, 173, 266, 286, 293
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 50
MalI GATC 5 cut(s) 140, 178, 197, 278, 293
MboI GATC 5 cut(s) 138, 176, 195, 276, 291
MboII GAAGA 2 cut(s) 92, 148
MflI RGATCY 1 cut(s) 276
MlyI GAGTC 2 cut(s) 26, 170
MnlI CCTC 3 cut(s) 95, 244, 277
MseI TTAA 1 cut(s) 95
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 2 cut(s) 12, 71
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 5 cut(s) 138, 176, 195, 276, 291
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 5 cut(s) 102, 231, 258, 270, 278
NspI RCATGY 1 cut(s) 241
PciI ACATGT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 75
PflMI CCANNNNNTGG 1 cut(s) 286
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 4 cut(s) 11, 40, 43, 299
PleI GAGTC 2 cut(s) 25, 169
PpsI GAGTC 2 cut(s) 25, 169
PscI ACATGT 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 279
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 5 cut(s) 102, 231, 258, 270, 278
PspPI GGNCC 3 cut(s) 100, 256, 269
PstI CTGCAG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 2 cut(s) 211, 231
RsaNI GTAC 2 cut(s) 210, 230
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 4 cut(s) 10, 39, 42, 298
Sau3AI GATC 5 cut(s) 138, 176, 195, 276, 291
Sau96I GGNCC 3 cut(s) 100, 256, 269
SchI GAGTC 2 cut(s) 26, 170
ScrFI CCNGG 1 cut(s) 281
SetI ASST 7 cut(s) 66, 87, 93, 207, 231, 255, 288
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 2 cut(s) 100, 256
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SsiI CCGC 4 cut(s) 10, 39, 42, 71
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 50, 148
TaqI TCGA 3 cut(s) 15, 78, 179
TauI GCSGC 3 cut(s) 12, 41, 44
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 227
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 100, 256
VspI ATTAAT 1 cut(s) 95
XceI RCATGY 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.