Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0023050

Physical Location & Seq

Genomic Coordinates Reverse (-)

112362 .. 116600

Gene Structure 4239 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgaattgccgcgtcgagtccagcgacttcaaaaaggtagcagccgactgttacttctggaagcttcacgcggaaatcgaagacctccacttgttaatggacccgaaggactttctccggctcaagaaccagttgaagatcaaaacggtggacgatacaaagtcgttgtgctttagatcgaagggactggtggagatcaccaagctgtgtacggacttgaagcataaggtaccaaacgtgttgggagtggaggtggacccgatgggcgggccaaggatccaggaggcggcgatctgctgcaggcgatgcagactatcaagtcagcgacgccggagtcaccagtccggtagccggattccgtcgccggtcgccggagttcggggccggtcattgtcgaaggagacgcgcagctgccacgtcggaagtgaagagaatgtggctgacgtcaaggttggacgcgcagaaacagacgcggagaagagggagactggagcgcacgaacgaatgagtaagctccagctggcaaccgcgtctgcatcttttttgcacctagcgacagtgagtgggacacgtggcatgcagccgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

196

Amino Acids

21.83

Weight (kDa)

9.38

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hs1pro-1_C	PF07014	3 - 98	3.2e-40	Hs1pro-1 protein C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023050)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000595.1_g000021
rosa_samantha	Rh2BG182400 Rh3CG192600 Rh3CG199800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	318, 333
AatII	GACGTC	1 cut(s)	447
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
AciI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
AclWI	GGATC	2 cut(s)	271, 284
AcvI	CACGTG	1 cut(s)	572
AcyI	GRCGYC	2 cut(s)	328, 444
AfaI	GTAC	2 cut(s)	211, 231
AfiI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
AflIII	ACRYGT	2 cut(s)	237, 569
AgsI	TTSAA	3 cut(s)	31, 136, 220
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	5 cut(s)	64, 205, 411, 514, 520
AluI	AGCT	5 cut(s)	64, 205, 411, 514, 520
Alw26I	GTCTC	2 cut(s)	395, 479
AlwI	GGATC	2 cut(s)	271, 284
AoxI	GGCC	2 cut(s)	269, 382
ApeKI	GCWGC	5 cut(s)	41, 297, 408, 411, 580
Asp718I	GGTACC	1 cut(s)	229
AspLEI	GCGC	3 cut(s)	408, 461, 496
AspS9I	GGNCC	4 cut(s)	100, 256, 269, 382
AsuHPI	GGTGA	2 cut(s)	190, 329
AvaII	GGWCC	2 cut(s)	100, 256
BamHI	GGATCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	53, 284, 398, 420
BccI	CCATC	1 cut(s)	256
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	395, 479
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
BlsI	GCNGC	7 cut(s)	11, 43, 289, 299, 410, 413, 582
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	100, 256
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	4 cut(s)	100, 256, 269, 382
BmiI	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	296, 545
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	500, 510
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	572
BsaHI	GRCGYC	2 cut(s)	328, 444
BsaJI	CCNNGG	1 cut(s)	272
BsaWI	WCCGGW	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
Bse118I	RCCGGY	2 cut(s)	364, 384
Bse1I	ACTGG	4 cut(s)	130, 192, 340, 493
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
BseNI	ACTGG	4 cut(s)	130, 192, 340, 493
BseXI	GCAGC	4 cut(s)	53, 284, 398, 420
Bsh1236I	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	271, 384
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
BslFI	GGGAC	2 cut(s)	198, 580
BslI	CCNNNNNNNGG	5 cut(s)	266, 286, 351, 371, 378
BsmAI	GTCTC	2 cut(s)	395, 479
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	2 cut(s)	198, 580
BsnI	GGCC	2 cut(s)	271, 384
Bsp143I	GATC	5 cut(s)	138, 176, 195, 276, 291
BspACI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
BspANI	GGCC	2 cut(s)	271, 384
BspFNI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BspLI	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	2 cut(s)	271, 284
BspT107I	GGYRCC	1 cut(s)	229
BsrFI	RCCGGY	2 cut(s)	364, 384
BsrI	ACTGG	4 cut(s)	130, 192, 340, 493
BssAI	RCCGGY	2 cut(s)	364, 384
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	5 cut(s)	138, 176, 195, 276, 291
BssNI	GRCGYC	2 cut(s)	328, 444
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	50, 148, 559
Bst6I	CTCTTC	2 cut(s)	423, 473
BstACI	GRCGYC	2 cut(s)	328, 444
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	4 cut(s)	269, 302, 522, 578
BstFNI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BstHHI	GCGC	3 cut(s)	408, 461, 496
BstKTI	GATC	5 cut(s)	141, 179, 198, 279, 294
BstMAI	GTCTC	2 cut(s)	395, 479
BstMBI	GATC	5 cut(s)	138, 176, 195, 276, 291
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
BstV1I	GCAGC	4 cut(s)	53, 284, 398, 420
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	271, 384
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	4 cut(s)	269, 302, 522, 578
CfoI	GCGC	3 cut(s)	408, 461, 496
Cfr10I	RCCGGY	2 cut(s)	364, 384
Cfr13I	GGNCC	4 cut(s)	100, 256, 269, 382
CseI	GACGC	5 cut(s)	336, 412, 465, 479, 519
Csp6I	GTAC	2 cut(s)	210, 230
CviAII	CATG	1 cut(s)	577
CviQI	GTAC	2 cut(s)	210, 230
DpnI	GATC	5 cut(s)	140, 178, 197, 278, 293
DpnII	GATC	5 cut(s)	138, 176, 195, 276, 291
DrdI	GACNNNNNNGTC	2 cut(s)	318, 333
DseDI	GACNNNNNNGTC	2 cut(s)	318, 333
Eam1104I	CTCTTC	2 cut(s)	423, 473
EarI	CTCTTC	2 cut(s)	423, 473
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	100, 256
Eco72I	CACGTG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	1 cut(s)	580
FaiI	YATR	2 cut(s)	225, 578
FaqI	GGGAC	2 cut(s)	198, 580
FatI	CATG	1 cut(s)	576
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
Fsp4HI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	3 cut(s)	407, 460, 495
GluI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
GsuI	CTGGAG	2 cut(s)	500, 510
HaeIII	GGCC	2 cut(s)	271, 384
HapII	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
HgaI	GACGC	5 cut(s)	336, 412, 465, 479, 519
HhaI	GCGC	3 cut(s)	408, 461, 496
Hin1I	GRCGYC	2 cut(s)	328, 444
Hin1II	CATG	1 cut(s)	580
Hin6I	GCGC	3 cut(s)	406, 459, 494
HinP1I	GCGC	3 cut(s)	406, 459, 494
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	17, 334, 355
HpaII	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
HphI	GGTGA	2 cut(s)	190, 329
Hpy166II	GTNNAC	3 cut(s)	151, 210, 256
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	2 cut(s)	58, 124
Hpy8I	GTNNAC	3 cut(s)	151, 210, 256
Hpy99I	CGWCG	4 cut(s)	17, 330, 364, 422
HpyAV	CCTTC	3 cut(s)	100, 175, 391
HpyCH4III	ACNGT	3 cut(s)	50, 148, 559
HpyCH4IV	ACGT	4 cut(s)	237, 417, 444, 571
HpyCH4V	TGCA	5 cut(s)	300, 309, 536, 547, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpySE526I	ACGT	4 cut(s)	237, 417, 444, 571
Hsp92I	GRCGYC	2 cut(s)	328, 444
Hsp92II	CATG	1 cut(s)	580
HspAI	GCGC	3 cut(s)	406, 459, 494
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	138, 176, 195, 276, 291
LmnI	GCTCC	2 cut(s)	491, 519
Lsp1109I	GCAGC	4 cut(s)	53, 284, 398, 420
LweI	GCATC	2 cut(s)	296, 545
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	4 cut(s)	237, 417, 444, 571
MaeIII	GTNAC	2 cut(s)	50, 335
MalI	GATC	5 cut(s)	140, 178, 197, 278, 293
MboI	GATC	5 cut(s)	138, 176, 195, 276, 291
MboII	GAAGA	4 cut(s)	92, 148, 440, 490
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	2 cut(s)	26, 343
MmeI	TCCRAC	2 cut(s)	400, 433
MnlI	CCTC	4 cut(s)	95, 244, 277, 474
MseI	TTAA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	411, 520
MspI	CCGG	7 cut(s)	118, 331, 345, 352, 365, 372, 385
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	6 cut(s)	12, 71, 406, 459, 473, 530
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeII	GATC	5 cut(s)	138, 176, 195, 276, 291
NlaIII	CATG	1 cut(s)	580
NlaIV	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 75
PfeI	GAWTC	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	7 cut(s)	11, 43, 289, 299, 410, 413, 582
PleI	GAGTC	2 cut(s)	25, 342
PmaCI	CACGTG	1 cut(s)	572
PmlI	CACGTG	1 cut(s)	572
PpsI	GAGTC	2 cut(s)	25, 342
Ppu21I	YACGTR	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	5 cut(s)	102, 231, 258, 278, 383
PspPI	GGNCC	4 cut(s)	100, 256, 269, 382
PstI	CTGCAG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	2 cut(s)	411, 520
RsaI	GTAC	2 cut(s)	211, 231
RsaNI	GTAC	2 cut(s)	210, 230
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	7 cut(s)	10, 42, 288, 298, 409, 412, 581
Sau3AI	GATC	5 cut(s)	138, 176, 195, 276, 291
Sau96I	GGNCC	4 cut(s)	100, 256, 269, 382
SchI	GAGTC	2 cut(s)	26, 343
ScrFI	CCNGG	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	296, 545
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	2 cut(s)	100, 256
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	6 cut(s)	10, 71, 267, 287, 473, 528
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	50, 148, 559
TaiI	ACGT	4 cut(s)	240, 420, 447, 574
TaqI	TCGA	4 cut(s)	15, 78, 179, 395
TasI	AATT	1 cut(s)	4
TauI	GCSGC	2 cut(s)	12, 290
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	5 cut(s)	41, 297, 408, 411, 580
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	227, 348
TspRI	CASTG	1 cut(s)	564
VpaK11BI	GGWCC	2 cut(s)	100, 256
XceI	RCATGY	1 cut(s)	580
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.