Cgr1 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0011701 |
| rosa_multiflora | Rmu_sc0000675.1_g000032 Rmu_sc0038132.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00188920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 244 |
| AcuI | CTGAAG | 1 cut(s) | 182 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 28 |
| AluBI | AGCT | 1 cut(s) | 160 |
| AluI | AGCT | 1 cut(s) | 160 |
| Alw26I | GTCTC | 1 cut(s) | 100 |
| Aor13HI | TCCGGA | 1 cut(s) | 244 |
| ApeKI | GCWGC | 1 cut(s) | 115 |
| AsuC2I | CCSGG | 1 cut(s) | 88 |
| BbvI | GCAGC | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 255 |
| BcnI | CCSGG | 1 cut(s) | 88 |
| BcoDI | GTCTC | 1 cut(s) | 100 |
| BisI | GCNGC | 1 cut(s) | 116 |
| BlsI | GCNGC | 1 cut(s) | 117 |
| Bme1390I | CCNGG | 1 cut(s) | 88 |
| BmrFI | CCNGG | 1 cut(s) | 88 |
| BpuMI | CCSGG | 1 cut(s) | 88 |
| BsaI | GGTCTC | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 1 cut(s) | 119 |
| BsaWI | WCCGGW | 1 cut(s) | 244 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 28 |
| Bse1I | ACTGG | 1 cut(s) | 74 |
| BseAI | TCCGGA | 1 cut(s) | 244 |
| BseDI | CCNNGG | 1 cut(s) | 119 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BseNI | ACTGG | 1 cut(s) | 74 |
| BseRI | GAGGAG | 3 cut(s) | 203, 211, 263 |
| BseXI | GCAGC | 1 cut(s) | 127 |
| BsiSI | CCGG | 3 cut(s) | 29, 87, 245 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 28 |
| BsmAI | GTCTC | 1 cut(s) | 100 |
| Bso31I | GGTCTC | 1 cut(s) | 100 |
| Bsp13I | TCCGGA | 1 cut(s) | 244 |
| Bsp143I | GATC | 3 cut(s) | 38, 81, 255 |
| BspEI | TCCGGA | 1 cut(s) | 244 |
| BspTNI | GGTCTC | 1 cut(s) | 100 |
| BsrI | ACTGG | 1 cut(s) | 74 |
| BssECI | CCNNGG | 1 cut(s) | 119 |
| BssMI | GATC | 3 cut(s) | 38, 81, 255 |
| Bst6I | CTCTTC | 1 cut(s) | 188 |
| BstKTI | GATC | 3 cut(s) | 41, 84, 258 |
| BstMAI | GTCTC | 1 cut(s) | 100 |
| BstMBI | GATC | 3 cut(s) | 38, 81, 255 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 124 |
| BstSCI | CCNGG | 1 cut(s) | 86 |
| BstV1I | GCAGC | 1 cut(s) | 127 |
| CviJI | RGCY | 2 cut(s) | 118, 160 |
| CviKI_1 | RGCY | 2 cut(s) | 118, 160 |
| DpnI | GATC | 3 cut(s) | 40, 83, 257 |
| DpnII | GATC | 3 cut(s) | 38, 81, 255 |
| Eam1104I | CTCTTC | 1 cut(s) | 188 |
| EarI | CTCTTC | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 100 |
| Eco57I | CTGAAG | 1 cut(s) | 182 |
| FbaI | TGATCA | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 116 |
| Fsp4HI | GCNGC | 1 cut(s) | 116 |
| GluI | GCNGC | 1 cut(s) | 116 |
| HapII | CCGG | 3 cut(s) | 29, 87, 245 |
| HpaII | CCGG | 3 cut(s) | 29, 87, 245 |
| Hpy188I | TCNGA | 2 cut(s) | 66, 147 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 245, 259 |
| Hpy99I | CGWCG | 1 cut(s) | 139 |
| HpyAV | CCTTC | 4 cut(s) | 61, 85, 157, 223 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 124 |
| Kpn2I | TCCGGA | 1 cut(s) | 244 |
| Ksp22I | TGATCA | 1 cut(s) | 255 |
| Kzo9I | GATC | 3 cut(s) | 38, 81, 255 |
| LpnPI | CCDG | 4 cut(s) | 42, 87, 100, 258 |
| Lsp1109I | GCAGC | 1 cut(s) | 127 |
| MalI | GATC | 3 cut(s) | 40, 83, 257 |
| MboI | GATC | 3 cut(s) | 38, 81, 255 |
| MboII | GAAGA | 6 cut(s) | 190, 205, 232, 233, 235, 238 |
| MnlI | CCTC | 9 cut(s) | 36, 114, 123, 181, 189, 192, 202, 241, 255 |
| MroI | TCCGGA | 1 cut(s) | 244 |
| MseI | TTAA | 1 cut(s) | 174 |
| MspI | CCGG | 3 cut(s) | 29, 87, 245 |
| MspR9I | CCNGG | 1 cut(s) | 88 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 124 |
| NciI | CCSGG | 1 cut(s) | 88 |
| NdeII | GATC | 3 cut(s) | 38, 81, 255 |
| NmeAIII | GCCGAG | 1 cut(s) | 144 |
| PkrI | GCNGC | 1 cut(s) | 117 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| SatI | GCNGC | 1 cut(s) | 116 |
| Sau3AI | GATC | 3 cut(s) | 38, 81, 255 |
| ScrFI | CCNGG | 1 cut(s) | 88 |
| SetI | ASST | 5 cut(s) | 20, 28, 96, 134, 162 |
| SspI | AATATT | 1 cut(s) | 238 |
| StyD4I | CCNGG | 1 cut(s) | 86 |
| TaqI | TCGA | 1 cut(s) | 9 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TseI | GCWGC | 1 cut(s) | 115 |