Rmu_sc0000762.1_g000027

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000762.1
OG0021637
Physical Location & Seq
Forward (+)
109122 .. 111692
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
atggtatcccagcgccaggacacctgcaccgacattgcggtgaaagccaggcaaagccagactaatccactgcaccgcagatgcacgaacccaaagggtccttcaaatctgctggccaagggatggagctgggattcgaacgctagacctggggtcaagtgtggcctcttcccgacccggcctatacccacttgctacgaggactcctgggcctctctccaatgggtcaccacccatgcgaacgaaaccaggccggatcaatggctaaatgagtacgccgacttgaaccgcgtcttcgtcggcggcgacaacacggaagggaccgacaatgagatgtggctttacataaacaaggagaatggagggttgcaggataggaggccagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

6.71

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_3 PF07859 58 - 103 1.1e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 123
AccII CGCG 1 cut(s) 291
AciI CCGC 4 cut(s) 38, 76, 289, 303
AclWI GGATC 1 cut(s) 264
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 16, 123
AgsI TTSAA 2 cut(s) 105, 286
AhdI GACNNNNNGTC 1 cut(s) 152
AjnI CCWGG 5 cut(s) 15, 47, 148, 206, 248
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
AlwI GGATC 1 cut(s) 264
AoxI GGCC 6 cut(s) 114, 163, 179, 210, 251, 380
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 98, 210, 321
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 52, 220
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 2 cut(s) 98, 321
BalI TGGCCA 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 286
BccI CCATC 1 cut(s) 117
BciT130I CCWGG 5 cut(s) 17, 49, 150, 208, 250
BciVI GTATCC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 32
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 6 cut(s) 17, 49, 150, 178, 208, 250
Bme18I GGWCC 2 cut(s) 98, 321
BmeRI GACNNNNNGTC 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 98, 210, 321
BmiI GGNNCC 2 cut(s) 99, 322
BmrFI CCNGG 6 cut(s) 17, 49, 150, 178, 208, 250
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 286
Bpu14I TTCGAA 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 117, 149, 207
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 123
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 5 cut(s) 17, 49, 150, 208, 250
BseDI CCNNGG 3 cut(s) 117, 149, 207
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 16, 123
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 383
BseYI CCCAGC 2 cut(s) 9, 129
BsgI GTGCAG 2 cut(s) 10, 56
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 6 cut(s) 116, 165, 181, 212, 253, 382
BsiSI CCGG 2 cut(s) 178, 254
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 16, 123
BsmFI GGGAC 1 cut(s) 334
BsnI GGCC 6 cut(s) 116, 165, 181, 212, 253, 382
Bsp119I TTCGAA 1 cut(s) 137
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 4 cut(s) 38, 76, 289, 303
BspANI GGCC 6 cut(s) 116, 165, 181, 212, 253, 382
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 99, 322
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 264
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 3 cut(s) 117, 149, 207
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 5 cut(s) 17, 49, 150, 208, 250
Bst6I CTCTTC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 5 cut(s) 17, 49, 150, 208, 250
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 6 cut(s) 15, 47, 148, 176, 206, 248
BstUI CGCG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 286
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 6 cut(s) 116, 165, 181, 212, 253, 382
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 98, 210, 321
CseI GACGC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 236
CviQI GTAC 1 cut(s) 274
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DriI GACNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 98, 321
Eco91I GGTNACC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 226
EcoRII CCWGG 5 cut(s) 15, 47, 148, 206, 248
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 185, 237, 347
FaqI GGGAC 1 cut(s) 334
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 304
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 304
GsaI CCCAGC 2 cut(s) 13, 133
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 116, 165, 181, 212, 253, 382
HapII CCGG 2 cut(s) 178, 254
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 134, 203
HpaII CCGG 2 cut(s) 178, 254
HphI GGTGA 2 cut(s) 52, 220
Hpy188III TCNNGA 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 111, 311
HpyCH4V TGCA 4 cut(s) 27, 73, 84, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 126
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 160, 286
MlsI TGGCCA 1 cut(s) 116
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 5 cut(s) 176, 193, 223, 356, 372
Mox20I TGGCCA 1 cut(s) 116
MscI TGGCCA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 2 cut(s) 178, 254
MspR9I CCNGG 6 cut(s) 17, 49, 150, 178, 208, 250
MvaI CCWGG 5 cut(s) 17, 49, 150, 208, 250
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 178
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 99, 322
NmuCI GTSAC 1 cut(s) 226
NspV TTCGAA 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
Psp6I CCWGG 5 cut(s) 15, 47, 148, 206, 248
PspEI GGTNACC 1 cut(s) 226
PspFI CCCAGC 2 cut(s) 9, 129
PspGI CCWGG 5 cut(s) 15, 47, 148, 206, 248
PspN4I GGNNCC 2 cut(s) 99, 322
PspPI GGNCC 3 cut(s) 98, 210, 321
PspPPI RGGWCCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 3 cut(s) 98, 210, 321
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 6 cut(s) 17, 49, 150, 178, 208, 250
SetI ASST 3 cut(s) 26, 131, 151
SfaNI GCATC 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 2 cut(s) 98, 321
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 4 cut(s) 38, 76, 289, 303
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 6 cut(s) 15, 47, 148, 176, 206, 248
StyI CCWWGG 1 cut(s) 117
TaqI TCGA 1 cut(s) 137
TaqII GACCGA 1 cut(s) 338
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 2 cut(s) 98, 321
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.