Rmu_sc0002755.1_g000008

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002755.1
OG0021637
Physical Location & Seq
Forward (+)
47524 .. 47841
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002755.1_g000008.1.cds

Sequence Viewer

Length: 318 bp
ctgtccgccttctcctccacctaccacgactacgtctccaccatctgctctaccgtcgacgtcatccctgtctctgtcgagtgcggccttgtcccgacttggcccatacccacttgctacgaggactcctgggcctctctccaatgggtcgccacccatgccaacggaaccaggccagatcaatggctaaacgagtacggagacttgaaccgcgtcttcgtcggcgatgatagcacaggagggaccgacaatgagatgtggctttacataaacaaggagaatggaaggttgcaggataggaggacggttcaggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

4.33

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 57
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 6, 84, 211
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 2 cut(s) 128, 170
Alw26I GTCTC 3 cut(s) 40, 76, 195
AoxI GGCC 4 cut(s) 85, 101, 132, 173
AspS9I GGNCC 3 cut(s) 102, 132, 243
AvaII GGWCC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 208
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 2 cut(s) 130, 172
BcoDI GTCTC 3 cut(s) 40, 76, 195
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 130, 172
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 3 cut(s) 102, 132, 243
BmiI GGNNCC 2 cut(s) 169, 244
BmrFI CCNGG 2 cut(s) 130, 172
BpiI GAAGAC 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 110, 140
BseBI CCWGG 2 cut(s) 130, 172
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 87, 103, 134, 175
BslFI GGGAC 2 cut(s) 77, 256
BsmAI GTCTC 3 cut(s) 40, 76, 195
BsmBI CGTCTC 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 77, 256
BsnI GGCC 4 cut(s) 87, 103, 134, 175
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 3 cut(s) 6, 84, 211
BspANI GGCC 4 cut(s) 87, 103, 134, 175
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 169, 244
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 130, 172
Bst4CI ACNGT 2 cut(s) 55, 307
BstACI GRCGYC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 3 cut(s) 40, 76, 195
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 158, 231
BstNI CCWGG 2 cut(s) 130, 172
BstSCI CCNGG 2 cut(s) 128, 170
BstUI CGCG 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 183
BsuRI GGCC 4 cut(s) 87, 103, 134, 175
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 63
Cfr13I GGNCC 3 cut(s) 102, 132, 243
CseI GACGC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 158
CviJI RGCY 6 cut(s) 87, 103, 134, 175, 187, 262
CviKI_1 RGCY 6 cut(s) 87, 103, 134, 175, 187, 262
CviQI GTAC 1 cut(s) 196
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 243
EcoRII CCWGG 2 cut(s) 128, 170
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 107, 159, 269
FaqI GGGAC 2 cut(s) 77, 256
FatI CATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 4 cut(s) 87, 103, 134, 175
HgaI GACGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 161
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 3 cut(s) 59, 62, 224
HpyAV CCTTC 2 cut(s) 19, 279
HpyCH4III ACNGT 2 cut(s) 55, 307
HpyCH4IV ACGT 2 cut(s) 33, 60
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 231
HpySE526I ACGT 2 cut(s) 33, 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 161
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 9 cut(s) 81, 115, 142, 157, 184, 189, 222, 278, 296
MaeII ACGT 2 cut(s) 33, 60
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 208
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 25, 115, 145, 233, 294
MspR9I CCNGG 2 cut(s) 130, 172
MvaI CCWGG 2 cut(s) 130, 172
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 158, 231
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 169, 244
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 128, 170
PspGI CCWGG 2 cut(s) 128, 170
PspN4I GGNNCC 2 cut(s) 169, 244
PspPI GGNCC 3 cut(s) 102, 132, 243
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SalI GTCGAC 1 cut(s) 56
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 3 cut(s) 102, 132, 243
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 130, 172
SetI ASST 5 cut(s) 23, 36, 63, 290, 315
SgrDI CGTCGACG 1 cut(s) 56
SinI GGWCC 1 cut(s) 243
SsiI CCGC 3 cut(s) 6, 84, 211
StyD4I CCNGG 2 cut(s) 128, 170
TaaI ACNGT 2 cut(s) 55, 307
TaiI ACGT 2 cut(s) 36, 63
TaqI TCGA 2 cut(s) 57, 78
TaqII GACCGA 1 cut(s) 260
TauI GCSGC 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 180, 213
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 57
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.