Rmu_sc0013615.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013615.1
OG0021637
Physical Location & Seq
Reverse (-)
6546 .. 6926
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013615.1_g000002.1.cds

Sequence Viewer

Length: 381 bp
ctggccacccctctctctctcacacacccatatctaaccgtgtcctccttctcctccacctaccataactacgtctccaccatctgctctgccaccggcgtcatcgcggtctccgttgagtacggcctcttcccgactcggcccatacccgcttgctacgaggactccagggcctctctccaatgggtcgccacccacgtgaacggaaccaggctggatcaatggctaaacgagtacgccgacttgaaccgcatcttcgtctgcggcgacagcacggaaaggaccgatgataagatgtggctttacataaacaaggagaatgaaggggtgcaggataggaggttaaagctggcagcggaggatctaaggactatgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

126

Amino Acids

14.29

Weight (kDa)

5.24

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 107, 150, 250, 264, 356
AclWI GGATC 2 cut(s) 225, 369
AcoI YGGCCR 1 cut(s) 3
AcvI CACGTG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 2 cut(s) 122, 236
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 2 cut(s) 167, 209
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 79, 115
AlwI GGATC 2 cut(s) 225, 369
AoxI GGCC 4 cut(s) 3, 124, 140, 171
ApeKI GCWGC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 141, 171, 282
AvaII GGWCC 1 cut(s) 282
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbrPI CACGTG 1 cut(s) 199
BbvI GCAGC 1 cut(s) 365
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 139
BciT130I CCWGG 2 cut(s) 169, 211
BcoDI GTCTC 2 cut(s) 79, 115
BisI GCNGC 2 cut(s) 265, 354
BlsI GCNGC 2 cut(s) 266, 355
Bme1390I CCNGG 2 cut(s) 169, 211
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 3 cut(s) 141, 171, 282
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 169, 211
BmsI GCATC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 149, 179
Bse118I RCCGGY 1 cut(s) 95
BseBI CCWGG 2 cut(s) 169, 211
BseDI CCNNGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 365
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 4 cut(s) 5, 126, 142, 173
BsiSI CCGG 1 cut(s) 96
BsmAI GTCTC 2 cut(s) 79, 115
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 4 cut(s) 5, 126, 142, 173
Bso31I GGTCTC 1 cut(s) 115
Bsp143I GATC 2 cut(s) 217, 361
BspACI CCGC 5 cut(s) 107, 150, 250, 264, 356
BspANI GGCC 4 cut(s) 5, 126, 142, 173
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 225, 369
BspTNI GGTCTC 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 217, 361
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 169, 211
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 154, 351
BstDEI CTNAG 1 cut(s) 365
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 2 cut(s) 220, 364
BstMAI GTCTC 2 cut(s) 79, 115
BstMBI GATC 2 cut(s) 217, 361
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 2 cut(s) 169, 211
BstSCI CCNGG 2 cut(s) 167, 209
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 4 cut(s) 5, 126, 142, 173
BtgZI GCGATG 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 154, 351
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 141, 171, 282
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 121, 235
CviJI RGCY 8 cut(s) 5, 126, 142, 173, 214, 226, 301, 349
CviKI_1 RGCY 8 cut(s) 5, 126, 142, 173, 214, 226, 301, 349
CviQI GTAC 2 cut(s) 121, 235
DdeI CTNAG 1 cut(s) 365
DpnI GATC 2 cut(s) 219, 363
DpnII GATC 2 cut(s) 217, 361
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 167, 209
Esp3I CGTCTC 1 cut(s) 79
FaiI YATR 5 cut(s) 31, 66, 146, 308, 374
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 265, 354
Fsp4HI GCNGC 2 cut(s) 265, 354
GluI GCNGC 2 cut(s) 265, 354
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 4 cut(s) 5, 126, 142, 173
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 99
HinfI GANTC 2 cut(s) 136, 164
HpaII CCGG 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 58, 317
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 2 cut(s) 72, 198
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 2 cut(s) 72, 198
Hsp92I GRCGYC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 217, 361
LpnPI CCDG 8 cut(s) 109, 154, 181, 196, 200, 223, 317, 335
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 1 cut(s) 261
MaeII ACGT 2 cut(s) 72, 198
MalI GATC 2 cut(s) 219, 363
MboI GATC 2 cut(s) 217, 361
MboII GAAGA 2 cut(s) 121, 247
MflI RGATCY 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 130, 158
MnlI CCTC 8 cut(s) 21, 55, 64, 137, 154, 184, 333, 352
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 169, 211
MvaI CCWGG 2 cut(s) 169, 211
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 2 cut(s) 217, 361
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 4 cut(s) 111, 195, 237, 264
PkrI GCNGC 2 cut(s) 266, 355
PleI GAGTC 2 cut(s) 130, 158
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 2 cut(s) 130, 158
Ppu21I YACGTR 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 167, 209
PspCI CACGTG 1 cut(s) 199
PspGI CCWGG 2 cut(s) 167, 209
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 141, 171, 282
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 2 cut(s) 122, 236
RsaNI GTAC 2 cut(s) 121, 235
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 2 cut(s) 265, 354
Sau3AI GATC 2 cut(s) 217, 361
Sau96I GGNCC 3 cut(s) 141, 171, 282
SchI GAGTC 2 cut(s) 130, 158
ScrFI CCNGG 2 cut(s) 169, 211
SetI ASST 5 cut(s) 62, 75, 201, 344, 351
SfaNI GCATC 1 cut(s) 261
SgrAI CRCCGGYG 1 cut(s) 95
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 197
SsiI CCGC 5 cut(s) 107, 150, 250, 264, 356
StyD4I CCNGG 2 cut(s) 167, 209
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 2 cut(s) 75, 201
TaqII GACCGA 1 cut(s) 299
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 3 cut(s) 103, 219, 290
VpaK11BI GGWCC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.