Rmu_sc0006282.1_g000020

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006282.1
OG0021637
Physical Location & Seq
Forward (+)
74583 .. 74966
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006282.1_g000020.1.cds

Sequence Viewer

Length: 384 bp
ctggccacctctctctctctctctctctctctctctctctctcacccatatcttaccgtgtcctccttctcctccacctaccacgactacatctccaccatctgctttgccgccggcgtcatcgcggtctccatcgagtacggcctcttcccgacccggcccatacccgcttgctacgaggactcctgggcctctctccaatgggtcgccaaccacccgaacggaaccaggccggatcaatggctaaacgagtacgctgacttgaaccgcatcttcgtcggcggcgacaacacagaagggaccgatgatgagatgtggctttacataaacaaggagaatgaaggggtgcaggatagcaggttgagctcgccttgccatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009056 GO:0016787 GO:0016788 GO:0044424 GO:0044444 GO:0044464 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

127

Amino Acids

14.1

Weight (kDa)

4.42

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 111, 125, 168, 268, 282
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 2 cut(s) 140, 254
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 2 cut(s) 185, 227
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 243
AoxI GGCC 5 cut(s) 3, 142, 158, 189, 230
AspS9I GGNCC 3 cut(s) 159, 189, 300
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 300
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 2 cut(s) 107, 140
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BciT130I CCWGG 2 cut(s) 187, 229
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 133
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 2 cut(s) 111, 283
BlsI GCNGC 2 cut(s) 112, 284
Bme1390I CCNGG 3 cut(s) 157, 187, 229
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 3 cut(s) 159, 189, 300
BmiI GGNNCC 2 cut(s) 226, 301
BmrFI CCNGG 3 cut(s) 157, 187, 229
BmsI GCATC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 186, 376
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 2 cut(s) 187, 229
BseDI CCNNGG 2 cut(s) 186, 376
BseLI CCNNNNNNNGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 5 cut(s) 5, 144, 160, 191, 232
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 3 cut(s) 114, 157, 233
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 5 cut(s) 5, 144, 160, 191, 232
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 235
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 5 cut(s) 111, 125, 168, 268, 282
BspANI GGCC 5 cut(s) 5, 144, 160, 191, 232
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 226, 301
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 186, 376
BssMI GATC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 2 cut(s) 187, 229
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 115, 172, 368
BstDSI CCRYGG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 363, 372
BstNI CCWGG 2 cut(s) 187, 229
BstSCI CCNGG 3 cut(s) 155, 185, 227
BstUI CGCG 1 cut(s) 125
BsuRI GGCC 5 cut(s) 5, 144, 160, 191, 232
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 3 cut(s) 115, 172, 368
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 159, 189, 300
CseI GACGC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 139, 253
CviAII CATG 1 cut(s) 377
CviJI RGCY 8 cut(s) 5, 144, 160, 191, 232, 244, 319, 366
CviKI_1 RGCY 8 cut(s) 5, 144, 160, 191, 232, 244, 319, 366
CviQI GTAC 2 cut(s) 139, 253
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 185, 227
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 380
FaiI YATR 4 cut(s) 49, 164, 326, 378
FaqI GGGAC 1 cut(s) 313
FatI CATG 1 cut(s) 376
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 111, 283
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 111, 283
GluI GCNGC 2 cut(s) 111, 283
HaeIII GGCC 5 cut(s) 5, 144, 160, 191, 232
HapII CCGG 3 cut(s) 114, 157, 233
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 380
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 114, 157, 233
HphI GGTGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 76, 290, 335
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 372
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 380
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 9 cut(s) 127, 170, 172, 199, 214, 241, 246, 335, 343
LweI GCATC 1 cut(s) 279
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 139, 265
MhlI GDGCHC 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 6 cut(s) 19, 73, 82, 155, 172, 202
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 113
MroNI GCCGGC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 114, 157, 233
MspR9I CCNGG 3 cut(s) 157, 187, 229
MvaI CCWGG 2 cut(s) 187, 229
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 363, 372
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 376
NdeII GATC 1 cut(s) 235
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 380
NlaIV GGNNCC 2 cut(s) 226, 301
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 112, 284
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 185, 227
PspGI CCWGG 2 cut(s) 185, 227
PspN4I GGNNCC 2 cut(s) 226, 301
PspPI GGNCC 3 cut(s) 159, 189, 300
RsaI GTAC 2 cut(s) 140, 254
RsaNI GTAC 2 cut(s) 139, 253
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 2 cut(s) 111, 283
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 3 cut(s) 159, 189, 300
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 157, 187, 229
SduI GDGCHC 1 cut(s) 368
SetI ASST 4 cut(s) 11, 80, 362, 368
SfaNI GCATC 1 cut(s) 279
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 300
SsiI CCGC 5 cut(s) 111, 125, 168, 268, 282
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 3 cut(s) 155, 185, 227
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 135
TaqII GACCGA 1 cut(s) 317
TauI GCSGC 2 cut(s) 113, 285
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.