gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0000805.1_g000054 Rmu_sc0004689.1_g000009 Rmu_sc0030761.1_g000001 |
| rosa_samantha | Rh5CG251200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 104 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 2 cut(s) | 92, 215 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 104 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 141, 227 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsmAI | GTCTC | 1 cut(s) | 104 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstMAI | GTCTC | 1 cut(s) | 104 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 136 |
| CviJI | RGCY | 9 cut(s) | 48, 95, 124, 129, 155, 161, 182, 206, 280 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 95, 124, 129, 155, 161, 182, 206, 280 |
| CviQI | GTAC | 1 cut(s) | 247 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaeI | CATG | 1 cut(s) | 139 |
| FaiI | YATR | 4 cut(s) | 137, 228, 230, 257 |
| FatI | CATG | 1 cut(s) | 135 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| Hin1II | CATG | 1 cut(s) | 139 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 115, 220, 236 |
| Hpy188I | TCNGA | 1 cut(s) | 12 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 71, 119 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 289 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpySE526I | ACGT | 1 cut(s) | 289 |
| Hsp92II | CATG | 1 cut(s) | 139 |
| LpnPI | CCDG | 6 cut(s) | 30, 36, 46, 95, 116, 143 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 289 |
| MluCI | AATT | 1 cut(s) | 17 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MseI | TTAA | 1 cut(s) | 185 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 139 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 1 cut(s) | 185 |
| SatI | GCNGC | 1 cut(s) | 180 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SetI | ASST | 4 cut(s) | 65, 157, 163, 292 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 242 |
| Sse9I | AATT | 1 cut(s) | 17 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 1 cut(s) | 126 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 292 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 17 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 1 cut(s) | 185 |
| Tru9I | TTAA | 1 cut(s) | 185 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 1 cut(s) | 282 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XspI | CTAG | 1 cut(s) | 126 |