gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0000805.1_g000054 Rmu_sc0004689.1_g000009 Rmu_sc0030761.1_g000001 |
| rosa_samantha | Rh5CG251200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 79 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 122 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AluBI | AGCT | 3 cut(s) | 48, 155, 161 |
| AluI | AGCT | 3 cut(s) | 48, 155, 161 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 114 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 1 cut(s) | 92 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BfaI | CTAG | 3 cut(s) | 45, 126, 273 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 24, 244 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 3 cut(s) | 139, 210, 238 |
| BseNI | ACTGG | 2 cut(s) | 24, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp143I | GATC | 1 cut(s) | 207 |
| BspACI | CCGC | 1 cut(s) | 79 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BsrI | ACTGG | 2 cut(s) | 24, 244 |
| BssMI | GATC | 1 cut(s) | 207 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 3 cut(s) | 139, 210, 238 |
| BstKTI | GATC | 1 cut(s) | 210 |
| BstMBI | GATC | 1 cut(s) | 207 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsCI | GGATG | 3 cut(s) | 139, 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviJI | RGCY | 7 cut(s) | 48, 95, 129, 155, 161, 182, 280 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 95, 129, 155, 161, 182, 280 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DpnI | GATC | 1 cut(s) | 209 |
| DpnII | GATC | 1 cut(s) | 207 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaiI | YATR | 3 cut(s) | 228, 230, 257 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 146, 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 3 cut(s) | 45, 126, 273 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 115, 220, 236 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy166II | GTNNAC | 1 cut(s) | 141 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 71, 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 141 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| Kzo9I | GATC | 1 cut(s) | 207 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| MaeI | CTAG | 3 cut(s) | 45, 126, 273 |
| MalI | GATC | 1 cut(s) | 209 |
| MboI | GATC | 1 cut(s) | 207 |
| MboII | GAAGA | 3 cut(s) | 179, 275, 278 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 1 cut(s) | 181 |
| MroXI | GAANNNNTTC | 1 cut(s) | 114 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 114 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 207 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SetI | ASST | 7 cut(s) | 12, 50, 65, 127, 157, 163, 201 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 1 cut(s) | 156 |
| SmoI | CTYRAG | 1 cut(s) | 156 |
| SsiI | CCGC | 1 cut(s) | 79 |
| SspMI | CTAG | 3 cut(s) | 45, 126, 273 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 3 cut(s) | 17, 272, 276 |
| XmnI | GAANNNNTTC | 1 cut(s) | 114 |
| XspI | CTAG | 3 cut(s) | 45, 126, 273 |