Rmu_sc0004689.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004689.1
OG0023054
Physical Location & Seq
Reverse (-)
43226 .. 43528
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004689.1_g000009.1.cds

Sequence Viewer

Length: 303 bp
atgatcagtaacctgaataaattggactttgctccattgggaacaactggctctggatatcacaggtgggttcatgatgtccaccagcatctcaaggccgatggaatcctggatacgattctcgagcctagccaggaattgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggaaaataaggcgaaagtcatcatcctaatgactcgtcatatggatgattcactccagtacgagtgtatgaatgaagaggaccccagaaggctgtgggtcttactcgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

100

Amino Acids

11.48

Weight (kDa)

4.97

Isoelectric Point (pI)

56.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023054)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000805.1_g000054 Rmu_sc0004689.1_g000009 Rmu_sc0030761.1_g000001
rosa_samantha Rh5CG251200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 251
AjnI CCWGG 2 cut(s) 108, 132
AluBI AGCT 2 cut(s) 158, 164
AluI AGCT 2 cut(s) 158, 164
Ama87I CYCGRG 2 cut(s) 122, 296
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 271
AvaI CYCGRG 2 cut(s) 122, 296
AvaII GGWCC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 110, 134
BciVI GTATCC 1 cut(s) 106
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 110, 134
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 2 cut(s) 122, 296
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 110, 134
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 2 cut(s) 77, 144
Bse1I ACTGG 2 cut(s) 52, 247
BseBI CCWGG 2 cut(s) 110, 134
BseGI GGATG 2 cut(s) 213, 241
BseNI ACTGG 2 cut(s) 52, 247
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 2 cut(s) 122, 296
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 122, 296
Bsp143I GATC 1 cut(s) 3
BspANI GGCC 1 cut(s) 98
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 52, 247
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 110, 134
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 2 cut(s) 213, 241
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 170, 179
BstNI CCWGG 2 cut(s) 110, 134
BstSCI CCNGG 2 cut(s) 108, 132
BstV1I GCAGC 1 cut(s) 194
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 213, 241
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 74
CviJI RGCY 8 cut(s) 51, 98, 127, 132, 158, 164, 185, 283
CviKI_1 RGCY 8 cut(s) 51, 98, 127, 132, 158, 164, 185, 283
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 2 cut(s) 122, 296
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 108, 132
EcoRV GATATC 1 cut(s) 59
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 75, 231, 233, 260
FatI CATG 1 cut(s) 73
FauNDI CATATG 1 cut(s) 231
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 200, 248
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 105, 118, 223, 239
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 54, 74, 122
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 179
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 278
MluCI AATT 2 cut(s) 20, 137
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 184, 262
MslI CAYNNNNRTG 2 cut(s) 218, 234
MspR9I CCNGG 2 cut(s) 110, 134
MvaI CCWGG 2 cut(s) 110, 134
MwoI GCNNNNNNNGC 2 cut(s) 170, 179
NdeI CATATG 1 cut(s) 231
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 273
PaeR7I CTCGAG 2 cut(s) 122, 296
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 3 cut(s) 105, 118, 239
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 108, 132
PspGI CCWGG 2 cut(s) 108, 132
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 296
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 218, 234
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 110, 134
SetI ASST 4 cut(s) 15, 68, 160, 166
SfaNI GCATC 1 cut(s) 97
Sfr274I CTCGAG 2 cut(s) 122, 296
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 2 cut(s) 122, 296
SmiMI CAYNNNNRTG 2 cut(s) 218, 234
SmlI CTYRAG 4 cut(s) 92, 122, 159, 296
SmoI CTYRAG 4 cut(s) 92, 122, 159, 296
Sse9I AATT 2 cut(s) 20, 137
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 108, 132
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 123, 297
TasI AATT 2 cut(s) 20, 137
TfiI GAWTC 3 cut(s) 105, 118, 239
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 62, 275, 279
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 2 cut(s) 122, 296
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.