Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000831.1

Orthogroup ID

OG0019784

Physical Location & Seq

Genomic Coordinates Forward (+)

110817 .. 111470

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgggaggtgcggacaagtttggaaatgtgtatttcgtgcggttaccacaggatgtttcagatgagatagaagaagatccaacaggtgggaggataaaatgggagcaggggaagttgaatggcgctcccaacaaagtagaggagatagtgcagtttcatgtcggtgatgtggtcagctgctcgcagaaggcatctctcattccaggtggtggtgagtgcatcatttatgggacagtgatgggtagtttgggtgcattgcttgcattcacttcccgtgatgatgttgacttcttttctcacctggagatgtatatgaggcaagagcatccccccttgtgtggaagagatcacatggcttacagatcagcttatttcccggttaaggatgttattgatggggatctatgtgagcagtacccaacattgcctatggatctacagaggaaaattgcagatgagttggacagaactcctggagagatactgaagaaactcgaggaaattcgaaataagatcatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

173

Amino Acids

19.38

Weight (kDa)

4.83

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF_A	PF03178	3 - 139	2.2e-38	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019784)

Species	Orthologous Gene IDs
malus_domestica	MD07G1188800.v1.1
rosa_multiflora	Rmu_sc0000831.1_g000022 Rmu_sc0007491.1_g000001
rosa_rugosa	Rorug03G0255000
rosa_samantha	Rh1BG291600 Rh1CG308200 Rh1DG323300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 209
AciI	CCGC	2 cut(s)	11, 40
AclWI	GGATC	3 cut(s)	71, 408, 441
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	4 cut(s)	86, 209, 338, 382
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	202, 300, 472
AluBI	AGCT	2 cut(s)	177, 368
AluI	AGCT	2 cut(s)	177, 368
AlwI	GGATC	3 cut(s)	71, 408, 441
Ama87I	CYCGRG	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	176, 224, 290
AsuII	TTCGAA	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	494
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	232, 389
BciT130I	CCWGG	3 cut(s)	204, 302, 474
BcnI	CCSGG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	204, 302, 377, 474
BmeT110I	CYCGRG	1 cut(s)	494
BmrFI	CCNGG	4 cut(s)	204, 302, 377, 474
BmsI	GCATC	3 cut(s)	200, 228, 334
BpmI	CTGGAG	2 cut(s)	323, 495
Bpu14I	TTCGAA	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 209, 338, 382
Bse3DI	GCAATG	2 cut(s)	254, 422
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	204, 302, 474
BseGI	GGATG	3 cut(s)	58, 325, 391
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	4 cut(s)	86, 209, 338, 382
BseMI	GCAATG	2 cut(s)	254, 422
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	4 cut(s)	86, 209, 338, 382
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	494
Bsp119I	TTCGAA	1 cut(s)	505
Bsp143I	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
BspACI	CCGC	2 cut(s)	11, 40
BspPI	GGATC	3 cut(s)	71, 408, 441
BspT104I	TTCGAA	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	254, 422
BssMI	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
Bst2UI	CCWGG	3 cut(s)	204, 302, 474
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	182, 261
BstEII	GGTNACC	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	58, 325, 391
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	79, 349, 365, 403, 436, 516
BstMBI	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	3 cut(s)	204, 302, 474
BstPI	GGTNACC	1 cut(s)	42
BstSCI	CCNGG	4 cut(s)	202, 300, 375, 472
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	3 cut(s)	76, 400, 433
BstYI	RGATCY	3 cut(s)	76, 400, 433
BtsCI	GGATG	3 cut(s)	58, 325, 391
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	182, 261
CfoI	GCGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	158, 352
CviJI	RGCY	3 cut(s)	177, 356, 368
CviKI_1	RGCY	3 cut(s)	177, 356, 368
CviQI	GTAC	1 cut(s)	415
DpnI	GATC	6 cut(s)	78, 348, 364, 402, 435, 515
DpnII	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	494
Eco91I	GGTNACC	1 cut(s)	42
EcoO65I	GGTNACC	1 cut(s)	42
EcoRII	CCWGG	3 cut(s)	202, 300, 472
FaeI	CATG	2 cut(s)	161, 355
FaiI	YATR	7 cut(s)	159, 228, 312, 314, 353, 406, 431
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	2 cut(s)	157, 351
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	3 cut(s)	65, 312, 398
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	323, 495
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	161, 355
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	3 cut(s)	176, 224, 290
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	5 cut(s)	151, 219, 254, 263, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	161, 355
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
LmnI	GCTCC	2 cut(s)	103, 130
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	3 cut(s)	200, 228, 334
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	6 cut(s)	78, 348, 364, 402, 435, 515
MboI	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
MboII	GAAGA	4 cut(s)	83, 86, 354, 499
MflI	RGATCY	3 cut(s)	76, 400, 433
MluCI	AATT	2 cut(s)	447, 501
MmeI	TCCRAC	2 cut(s)	104, 441
MnlI	CCTC	5 cut(s)	84, 133, 309, 435, 490
MseI	TTAA	2 cut(s)	381, 520
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	4 cut(s)	204, 302, 377, 474
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	3 cut(s)	204, 302, 474
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
NlaIII	CATG	2 cut(s)	161, 355
NspV	TTCGAA	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	494
PctI	GAATGC	1 cut(s)	263
PflMI	CCANNNNNTGG	2 cut(s)	86, 209
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	179
Psp6I	CCWGG	3 cut(s)	202, 300, 472
PspEI	GGTNACC	1 cut(s)	42
PspGI	CCWGG	3 cut(s)	202, 300, 472
PspXI	VCTCGAGB	1 cut(s)	494
PsuI	RGATCY	3 cut(s)	76, 400, 433
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	381, 520
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	6 cut(s)	76, 346, 362, 400, 433, 513
ScrFI	CCNGG	4 cut(s)	204, 302, 377, 474
SetI	ASST	6 cut(s)	10, 88, 179, 208, 303, 370
SfaNI	GCATC	3 cut(s)	200, 228, 334
SfcI	CTRYAG	1 cut(s)	437
Sfr274I	CTCGAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	505
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	447, 501
SsiI	CCGC	2 cut(s)	11, 40
StyD4I	CCNGG	4 cut(s)	202, 300, 375, 472
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	495, 505
TasI	AATT	2 cut(s)	447, 501
Tru1I	TTAA	2 cut(s)	381, 520
Tru9I	TTAA	2 cut(s)	381, 520
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	240
Van91I	CCANNNNNTGG	2 cut(s)	86, 209
XapI	RAATTY	1 cut(s)	501
XhoI	CTCGAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.