Rmu_sc0000834.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000834.1
OG0025495
Physical Location & Seq
Reverse (-)
75829 .. 77308
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000834.1_g000017.1.cds

Sequence Viewer

Length: 525 bp
atgtcatcatcatcctattctcatcgtgatgatgatgatgaagatgaagatgaagatgatgatgatgatgattattattattattgtgtacatcatcgatctgaagcttctgatttgattaagaggattccatgtaaaccttggataaagacagcttttggtttaagatgcccttccgaaactattcttcttgatcctcaatggggttctttgctgagtgttcttcaggtgcctacaattgatgaaatgtattatgggaataaaattaggcatttcactaaagaattgaaagcagtgggagtggtggttgataatgccacagaaaccgagatgattgctgctcagttcagttctttattgtcttcttctaactggcttcctgcaaatatgatgtcactgttaggttgcatcagagaactgagtcaaactatgttcttgtttagccgcagattcattgtggaggaatatatattttgcacttacttggtgcttcatgacatatgggccgaagacaaagatacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.21

Weight (kDa)

4.44

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025495)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000834.1_g000017
rosa_rugosa Rorug06G0088500
rosa_samantha Rh1DG128600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AciI CCGC 1 cut(s) 445
AclWI GGATC 1 cut(s) 188
AcuI CTGAAG 2 cut(s) 123, 209
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 107, 155
AluI AGCT 2 cut(s) 107, 155
AlwI GGATC 1 cut(s) 188
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
Asp700I GAANNNNTTC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 504
BanI GGYRCC 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 354, 516
BbvI GCAGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BisI GCNGC 2 cut(s) 339, 445
BlsI GCNGC 2 cut(s) 340, 446
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 158, 417
BpiI GAAGAC 2 cut(s) 354, 516
Bsa29I ATCGAT 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 3 cut(s) 206, 356, 410
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 2 cut(s) 98, 193
BspACI CCGC 1 cut(s) 445
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 3 cut(s) 207, 355, 411
BspDI ATCGAT 1 cut(s) 97
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 98, 193
BssT1I CCWWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 399
BstAUI TGTACA 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 215, 342, 419
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 2 cut(s) 101, 196
BstMBI GATC 2 cut(s) 98, 193
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 2 cut(s) 354, 516
Bsu15I ATCGAT 1 cut(s) 97
BsuRI GGCC 1 cut(s) 506
BsuTUI ATCGAT 1 cut(s) 97
BtsCI GGATG 1 cut(s) 11
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 300, 395
CciI TCATGA 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 504
ClaI ATCGAT 1 cut(s) 97
Csp6I GTAC 1 cut(s) 89
CviAII CATG 2 cut(s) 132, 494
CviJI RGCY 5 cut(s) 107, 155, 376, 444, 506
CviKI_1 RGCY 5 cut(s) 107, 155, 376, 444, 506
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 3 cut(s) 215, 342, 419
DpnI GATC 2 cut(s) 100, 195
DpnII GATC 2 cut(s) 98, 193
Eco130I CCWWGG 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 123, 209
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 2 cut(s) 135, 497
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FatI CATG 2 cut(s) 131, 493
FauNDI CATATG 1 cut(s) 500
Fnu4HI GCNGC 2 cut(s) 339, 445
Fsp4HI GCNGC 2 cut(s) 339, 445
GluI GCNGC 2 cut(s) 339, 445
HaeIII GGCC 1 cut(s) 506
Hin1II CATG 2 cut(s) 135, 497
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 3 cut(s) 127, 421, 450
Hpy166II GTNNAC 2 cut(s) 89, 137
Hpy188I TCNGA 4 cut(s) 103, 112, 178, 413
Hpy188III TCNNGA 3 cut(s) 26, 191, 494
Hpy8I GTNNAC 2 cut(s) 89, 137
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 383, 408, 477
HpyF3I CTNAG 3 cut(s) 215, 342, 419
Hsp92II CATG 2 cut(s) 135, 497
Kzo9I GATC 2 cut(s) 98, 193
LpnPI CCDG 3 cut(s) 212, 358, 393
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 158, 417
MaeIII GTNAC 1 cut(s) 393
MalI GATC 2 cut(s) 100, 195
MboI GATC 2 cut(s) 98, 193
MboII GAAGA 8 cut(s) 53, 59, 65, 179, 215, 354, 357, 521
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 237, 264, 284
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 3 cut(s) 117, 207, 454
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 120, 164
MslI CAYNNNNRTG 1 cut(s) 27
MunI CAATTG 1 cut(s) 237
NdeI CATATG 1 cut(s) 500
NdeII GATC 2 cut(s) 98, 193
NlaIII CATG 2 cut(s) 135, 497
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 393
PagI TCATGA 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 127, 450
PkrI GCNGC 2 cut(s) 340, 446
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 504
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 120, 164
SatI GCNGC 2 cut(s) 339, 445
Sau3AI GATC 2 cut(s) 98, 193
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 430
SetI ASST 5 cut(s) 109, 142, 157, 231, 406
SfaNI GCATC 2 cut(s) 158, 417
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 3 cut(s) 237, 264, 284
SsiI CCGC 1 cut(s) 445
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 97
TasI AATT 3 cut(s) 237, 264, 284
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 447
TfiI GAWTC 2 cut(s) 127, 450
Tru1I TTAA 2 cut(s) 120, 164
Tru9I TTAA 2 cut(s) 120, 164
TscAI CASTG 2 cut(s) 300, 402
TseFI GTSAC 1 cut(s) 393
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 393
TspDTI ATGAA 6 cut(s) 54, 60, 66, 258, 442, 482
TspRI CASTG 2 cut(s) 300, 402
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.