Rh1DG128600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0025495
Physical Location & Seq
Reverse (-)
26853216 .. 26856391
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG128600.1

Sequence Viewer

Length: 642 bp
ATGAGGAAGGCAGACGCCAGTTGGCTGTTTATTGAAGGAAGAGAAGGGGTGGTGCAGAAGAAGTGGCTTAAGACTCTTCAAGGTTATAATGCTCCAAAGGGATCTATTCTCTTGCAATCTGCAATAGAGGTAGAAACTTGTTTGAAAATTACAAACCTTCCCGTTGTTGATGAAGCATTCTATGCAGGTGAGCTAGGCTCTTTCTTATCAGAATTAAGGCAACTTGGAGTTGAAAGTGATACAGTGGAAGTGCAAAAGTTAATTGCAGCGAATGTGACTTTGACTGCAAATCTGTCTTCCTTGACTAGTGATTGTGGTTTGTTGATTCTTAAATGCATCAAATGTTTGGGATATGAAGCTTCTGATTTGATTAAGAGGATTACATGTAAACCTTGGATAAAGACAACTTTTGGTTTAAGATGCCCTTCCGAAACTATTCTTCTTGATCCTCAATGGGGTTCTTTGCTGAGTGTTCTTCAGGTGCCTACAATTGATGAAATGTATTATGGGAATAAAATTAGGCATTTCACTAAAGAATTGAAAGCAGTGGGAGTGGTGGTTGATAATGCCACAGCAACCAAGATGATTGCTGCTAAGTTCAGTTCTTTATTGTCTTCTTCTAATGGCTTCCTGCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

8.16

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025495)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000834.1_g000017
rosa_rugosa Rorug06G0088500
rosa_samantha Rh1DG128600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 87
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 481
AclWI GGATC 2 cut(s) 109, 440
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 455
AflII CTTAAG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 383
AgsI TTSAA 5 cut(s) 35, 80, 145, 233, 541
AhlI ACTAGT 1 cut(s) 305
AluBI AGCT 2 cut(s) 193, 359
AluI AGCT 2 cut(s) 193, 359
AlwI GGATC 2 cut(s) 109, 440
ApeKI GCWGC 2 cut(s) 266, 590
Asp700I GAANNNNTTC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 288, 606
BbvI GCAGC 2 cut(s) 278, 577
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 2 cut(s) 194, 306
BfrI CTTAAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 2 cut(s) 267, 591
BlsI GCNGC 2 cut(s) 268, 592
BmiI GGNNCC 1 cut(s) 483
BmsI GCATC 2 cut(s) 345, 410
BpiI GAAGAC 2 cut(s) 288, 606
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 278, 577
BsgI GTGCAG 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 455
BsmI GAATGC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 101, 445
BspCNI CTCAG 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 483
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 2 cut(s) 109, 440
BspT107I GGYRCC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 2 cut(s) 101, 445
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 392
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 34, 81
BstACI GRCGYC 1 cut(s) 15
BstAFI CTTAAG 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 467, 594
BstKTI GATC 2 cut(s) 104, 448
BstMBI GATC 2 cut(s) 101, 445
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 278, 577
BstV2I GAAGAC 2 cut(s) 288, 606
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 2 cut(s) 249, 552
BveI ACCTGC 1 cut(s) 176
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 384
CviJI RGCY 6 cut(s) 25, 67, 193, 198, 359, 627
CviKI_1 RGCY 6 cut(s) 25, 67, 193, 198, 359, 627
DdeI CTNAG 2 cut(s) 467, 594
DpnI GATC 2 cut(s) 103, 447
DpnII GATC 2 cut(s) 101, 445
Eam1104I CTCTTC 2 cut(s) 34, 81
EarI CTCTTC 2 cut(s) 34, 81
Eco130I CCWWGG 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 1 cut(s) 387
FaiI YATR 6 cut(s) 87, 183, 354, 385, 507, 640
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FatI CATG 1 cut(s) 383
Fnu4HI GCNGC 2 cut(s) 267, 591
Fsp4HI GCNGC 2 cut(s) 267, 591
FspBI CTAG 2 cut(s) 194, 306
GluI GCNGC 2 cut(s) 267, 591
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 2 cut(s) 73, 325
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 211, 364, 430
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 4 cut(s) 29, 38, 167, 435
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 9 cut(s) 55, 115, 122, 185, 253, 266, 287, 336, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 467, 594
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 387
Kzo9I GATC 2 cut(s) 101, 445
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 31, 171, 464
Lsp1109I GCAGC 2 cut(s) 278, 577
LweI GCATC 2 cut(s) 345, 410
MaeI CTAG 2 cut(s) 194, 306
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 103, 447
MboI GATC 2 cut(s) 101, 445
MboII GAAGA 8 cut(s) 51, 68, 70, 288, 431, 467, 606, 609
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 1 cut(s) 101
MluCI AATT 6 cut(s) 147, 212, 261, 489, 516, 536
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 121, 369, 459
Mph1103I ATGCAT 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 6 cut(s) 69, 215, 260, 330, 372, 416
MspCI CTTAAG 1 cut(s) 68
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 101, 445
NlaIII CATG 1 cut(s) 387
NlaIV GGNNCC 1 cut(s) 483
NmuCI GTSAC 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 387
PaqCI CACCTGC 1 cut(s) 176
PciI ACATGT 1 cut(s) 383
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 268, 592
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 383
PsiI TTATAA 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 101
SaqAI TTAA 6 cut(s) 69, 215, 260, 330, 372, 416
SatI GCNGC 2 cut(s) 267, 591
Sau3AI GATC 2 cut(s) 101, 445
SchI GAGTC 1 cut(s) 67
SetI ASST 8 cut(s) 85, 132, 159, 190, 195, 361, 394, 483
SfaNI GCATC 2 cut(s) 345, 410
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 6 cut(s) 147, 212, 261, 489, 516, 536
SspMI CTAG 2 cut(s) 194, 306
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 244
TasI AATT 6 cut(s) 147, 212, 261, 489, 516, 536
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 6 cut(s) 69, 215, 260, 330, 372, 416
Tru9I TTAA 6 cut(s) 69, 215, 260, 330, 372, 416
TscAI CASTG 2 cut(s) 249, 552
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 266, 590
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 186, 369, 510
TspRI CASTG 2 cut(s) 249, 552
Vha464I CTTAAG 1 cut(s) 68
XceI RCATGY 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 2 cut(s) 194, 306
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.