Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0020728

Physical Location & Seq

Genomic Coordinates Reverse (-)

119166 .. 119705

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgcatgttggtcacttgagatccaccatcattggggacacaatagcacgcatgcttgagttttcgaacgttcaagttcttcgaaggaatcttgtaggtgattggggaacgcagtttggtattttgatcgagtcccttgtggaaaagtacccggagttggaagattttagcggaatagccattggagatctgcaggttttgtataaagaagccaatgatagatttaaacatggtttgcagcttctactttctatggacgtcactagcgctgtggtagagagtgactgccaagtagcagtgggagctattcacagtgatgtggctgacctatcccacctcagtgctctcgttgcagaagtgaaaggcttgttgaatgtccacgcaggtctgagtcttaggtttgtaccgcggcaggccaatacagtggctcaccggttagctagttatggttttgagtccaatgacaaccatgaatggtttgttaatgctccagctctattactggatgccctcatgtacgatttgaatcgtattcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

179

Amino Acids

19.82

Weight (kDa)

5.35

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	1 - 77	1.7e-24	tRNA synthetases class I (R), catalytic domain
RVT_3	PF13456	77 - 149	2.5e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020728)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000898.1_g000027
rosa_rugosa	Rorug04G0459200 Rorug05G0206400
rosa_samantha	Rh7AG292700 Rh7CG312800 Rh7DG296200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
Acc36I	ACCTGC	2 cut(s)	184, 374
AccII	CGCG	1 cut(s)	409
AciI	CCGC	3 cut(s)	171, 407, 409
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	3 cut(s)	149, 405, 518
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	33, 157
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	74, 373, 526
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	241, 305, 440, 494
AluI	AGCT	4 cut(s)	241, 305, 440, 494
Alw21I	GWGCWC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	15
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	238
AsiGI	ACCGGT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	110, 422
AsuII	TTCGAA	2 cut(s)	65, 82
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	35
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	264, 441
BfmI	CTRYAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	270
BfuAI	ACCTGC	2 cut(s)	184, 374
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	239, 410
BlsI	GCNGC	2 cut(s)	240, 411
Bme1390I	CCNGG	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	474
Bpu14I	TTCGAA	2 cut(s)	65, 82
BpuEI	CTTGAG	2 cut(s)	37, 77
BpuMI	CCSGG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 157
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	511
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	33, 157
BseMII	CTCAG	2 cut(s)	352, 380
BseNI	ACTGG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	416
BshTI	ACCGGT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	152, 433
BslFI	GGGAC	2 cut(s)	50, 118
BslI	CCNNNNNNNGG	2 cut(s)	33, 157
BsmFI	GGGAC	2 cut(s)	50, 118
BsnI	GGCC	1 cut(s)	416
Bsp119I	TTCGAA	2 cut(s)	65, 82
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	20, 126, 187
BspACI	CCGC	3 cut(s)	171, 407, 409
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	351, 381
BspFNI	CGCG	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	2 cut(s)	184, 374
BspPI	GGATC	1 cut(s)	15
BspT104I	TTCGAA	2 cut(s)	65, 82
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	3 cut(s)	20, 126, 187
BssNI	GRCGYC	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	314, 424
BstACI	GRCGYC	1 cut(s)	258
BstBI	TTCGAA	2 cut(s)	65, 82
BstC8I	GCNNGC	3 cut(s)	49, 53, 414
BstDEI	CTNAG	3 cut(s)	338, 389, 395
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	23, 129, 190
BstMBI	GATC	3 cut(s)	20, 126, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 350
BstNSI	RCATGY	2 cut(s)	8, 55
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	20, 187
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	2 cut(s)	20, 187
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	4 cut(s)	303, 319, 346, 429
BveI	ACCTGC	2 cut(s)	184, 374
Cac8I	GCNNGC	3 cut(s)	49, 53, 414
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	432
Cfr42I	CCGCGG	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	148, 404, 517
CspAI	ACCGGT	1 cut(s)	432
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	5 cut(s)	5, 52, 230, 470, 514
CviQI	GTAC	3 cut(s)	148, 404, 517
DdeI	CTNAG	3 cut(s)	338, 389, 395
DpnI	GATC	3 cut(s)	22, 128, 189
DpnII	GATC	3 cut(s)	20, 126, 187
DraI	TTTAAA	1 cut(s)	226
Eco47III	AGCGCT	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	5 cut(s)	8, 55, 233, 473, 517
FaiI	YATR	8 cut(s)	6, 53, 204, 231, 254, 447, 471, 515
FaqI	GGGAC	2 cut(s)	50, 118
FatI	CATG	5 cut(s)	4, 51, 229, 469, 513
Fnu4HI	GCNGC	2 cut(s)	239, 410
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	239, 410
FspBI	CTAG	2 cut(s)	264, 441
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	2 cut(s)	239, 410
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	152, 433
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	8, 55, 233, 473, 517
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	5 cut(s)	88, 131, 391, 455, 526
HpaII	CCGG	2 cut(s)	152, 433
HphI	GGTGA	2 cut(s)	110, 422
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	390
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	2 cut(s)	314, 424
HpyCH4IV	ACGT	2 cut(s)	69, 258
HpyCH4V	TGCA	4 cut(s)	4, 193, 238, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 350
HpyF3I	CTNAG	3 cut(s)	338, 389, 395
HpySE526I	ACGT	2 cut(s)	69, 258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	8, 55, 233, 473, 517
HspAI	GCGC	1 cut(s)	267
KspI	CCGCGG	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	20, 126, 187
LmnI	GCTCC	2 cut(s)	302, 493
LpnPI	CCDG	7 cut(s)	165, 179, 369, 398, 446, 488, 504
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	2 cut(s)	264, 441
MaeII	ACGT	2 cut(s)	69, 258
MaeIII	GTNAC	3 cut(s)	11, 259, 281
MalI	GATC	3 cut(s)	22, 128, 189
MboI	GATC	3 cut(s)	20, 126, 187
MboII	GAAGA	2 cut(s)	71, 173
MflI	RGATCY	2 cut(s)	20, 187
MhlI	GDGCHC	1 cut(s)	346
MlyI	GAGTC	3 cut(s)	140, 400, 464
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	347, 521
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	225, 483, 538
MslI	CAYNNNNRTG	2 cut(s)	315, 339
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	152, 433
MspR9I	CCNGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	302, 350
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	20, 126, 187
NlaIII	CATG	5 cut(s)	8, 55, 233, 473, 517
NmuCI	GTSAC	3 cut(s)	11, 259, 281
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 55
NspV	TTCGAA	2 cut(s)	65, 82
OliI	CACNNNNGTG	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	88, 526
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	240, 411
PleI	GAGTC	3 cut(s)	139, 399, 463
PpsI	GAGTC	3 cut(s)	139, 399, 463
Psp1406I	AACGTT	1 cut(s)	69
PstI	CTGCAG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	20, 187
RsaI	GTAC	3 cut(s)	149, 405, 518
RsaNI	GTAC	3 cut(s)	148, 404, 517
RseI	CAYNNNNRTG	2 cut(s)	315, 339
SacII	CCGCGG	1 cut(s)	410
SaqAI	TTAA	3 cut(s)	225, 483, 538
SatI	GCNGC	2 cut(s)	239, 410
Sau3AI	GATC	3 cut(s)	20, 126, 187
SchI	GAGTC	3 cut(s)	140, 400, 464
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	191
Sfr303I	CCGCGG	1 cut(s)	410
SfuI	TTCGAA	2 cut(s)	65, 82
SgrBI	CCGCGG	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	315, 339
SmlI	CTYRAG	2 cut(s)	16, 56
SmoI	CTYRAG	2 cut(s)	16, 56
SphI	GCATGC	1 cut(s)	55
SsiI	CCGC	3 cut(s)	171, 407, 409
SspMI	CTAG	2 cut(s)	264, 441
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	314, 424
TaiI	ACGT	2 cut(s)	72, 261
TaqI	TCGA	3 cut(s)	65, 82, 129
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	88, 526
Tru1I	TTAA	3 cut(s)	225, 483, 538
Tru9I	TTAA	3 cut(s)	225, 483, 538
TscAI	CASTG	4 cut(s)	303, 319, 346, 429
TseFI	GTSAC	3 cut(s)	11, 259, 281
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	3 cut(s)	11, 259, 281
TspDTI	ATGAA	2 cut(s)	486, 524
TspRI	CASTG	4 cut(s)	303, 319, 346, 429
XceI	RCATGY	2 cut(s)	8, 55
XspI	CTAG	2 cut(s)	264, 441
ZraI	GACGTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.