Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0020728

Physical Location & Seq

Genomic Coordinates Forward (+)

33281546 .. 33281995

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG312800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAAAGGGTTGTGGTGGACTTTTCGTCTCCAAATATAGCAAAAGAGATCGATGCATGTTGGTCACTTGAGATCCACCAACCTGGGGACACAATAGCACGCATGCTTGAGTATTCGAACGTTCTAGTTCTTCGAAGGAATCATGTAGGCGATTGGGGAACGCAGTTTGGTATTTTGATCGAGTCCCTTGTGGAAAAGTACCCGGAGTTGGAAGATTTTAGCGGAATAGCCATTGATAGATTTAAACGTGATCCCGAGTTTAAGGAGTCGGCACGAAAGGCAGTGGTGAAGCTTCAGAGTGGGAAGTCTAAGTACTGCAAGTACCGCAAGGCGTGGGAGCAAATCTGTGAAACTAGTCGGAGAGAATTTCAGAAGATTTATCAACGCCTTGGAGTTGAGTTGGAGGAAAAGGGAGAAAGCTTTTACAACCAGTATATTCCTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

149

Amino Acids

17.43

Weight (kDa)

7.67

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	2 - 148	2.6e-34	tRNA synthetases class I (R), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020728)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000898.1_g000027
rosa_rugosa	Rorug04G0459200 Rorug05G0206400
rosa_samantha	Rh7AG292700 Rh7CG312800 Rh7DG296200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	222, 325
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	2 cut(s)	67, 245
AcsI	RAATTY	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	3 cut(s)	200, 314, 323
AfiI	CCNNNNNNNGG	2 cut(s)	85, 208
AhdI	GACNNNNNGTC	1 cut(s)	25
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	82, 439
AluBI	AGCT	2 cut(s)	292, 420
AluI	AGCT	2 cut(s)	292, 420
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	67, 245
Ama87I	CYCGRG	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	2 cut(s)	116, 133
AvaI	CYCGRG	1 cut(s)	254
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BciT130I	CCWGG	2 cut(s)	84, 441
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	125, 354
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	84, 203, 441
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	84, 203, 441
BmsI	GCATC	1 cut(s)	43
Bpu14I	TTCGAA	2 cut(s)	116, 133
BpuEI	CTTGAG	2 cut(s)	89, 128
BpuMI	CCSGG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	83, 388, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 208
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	84, 441
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	83, 388, 440
BseLI	CCNNNNNNNGG	2 cut(s)	85, 208
BseNI	ACTGG	1 cut(s)	430
BshVI	ATCGAT	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	101, 169
BslI	CCNNNNNNNGG	2 cut(s)	85, 208
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	101, 169
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	2 cut(s)	116, 133
Bsp143I	GATC	4 cut(s)	48, 72, 177, 250
BspACI	CCGC	2 cut(s)	222, 325
BspDI	ATCGAT	1 cut(s)	51
BspPI	GGATC	2 cut(s)	67, 245
BspT104I	TTCGAA	2 cut(s)	116, 133
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	83, 388, 440
BssMI	GATC	4 cut(s)	48, 72, 177, 250
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	84, 441
BstBI	TTCGAA	2 cut(s)	116, 133
BstC8I	GCNNGC	2 cut(s)	100, 104
BstDEI	CTNAG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	51, 75, 180, 253
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	4 cut(s)	48, 72, 177, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 324
BstNI	CCWGG	2 cut(s)	84, 441
BstNSI	RCATGY	2 cut(s)	60, 106
BstSCI	CCNGG	3 cut(s)	82, 201, 439
BstX2I	RGATCY	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	51
BsuTUI	ATCGAT	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	100, 104
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	3 cut(s)	199, 313, 322
CviAII	CATG	3 cut(s)	57, 103, 143
CviJI	RGCY	3 cut(s)	230, 292, 420
CviKI_1	RGCY	3 cut(s)	230, 292, 420
CviQI	GTAC	3 cut(s)	199, 313, 322
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	4 cut(s)	50, 74, 179, 252
DpnII	GATC	4 cut(s)	48, 72, 177, 250
DraI	TTTAAA	1 cut(s)	244
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	82, 439
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	388
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	60, 106, 146
FaiI	YATR	5 cut(s)	38, 58, 104, 144, 435
FaqI	GGGAC	2 cut(s)	101, 169
FatI	CATG	3 cut(s)	56, 102, 142
FspBI	CTAG	2 cut(s)	125, 354
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	3 cut(s)	60, 106, 146
HindIII	AAGCTT	2 cut(s)	290, 418
HinfI	GANTC	3 cut(s)	139, 182, 266
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	297, 360, 372
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	129
HpyCH4IV	ACGT	2 cut(s)	120, 247
HpyCH4V	TGCA	2 cut(s)	56, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 324
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	120, 247
Hsp92II	CATG	3 cut(s)	60, 106, 146
Kzo9I	GATC	4 cut(s)	48, 72, 177, 250
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	5 cut(s)	69, 96, 216, 426, 443
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	125, 354
MaeII	ACGT	2 cut(s)	120, 247
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	4 cut(s)	50, 74, 179, 252
MboI	GATC	4 cut(s)	48, 72, 177, 250
MboII	GAAGA	3 cut(s)	122, 224, 385
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	2 cut(s)	191, 275
MmeI	TCCRAC	3 cut(s)	189, 338, 381
MnlI	CCTC	1 cut(s)	397
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	3 cut(s)	243, 261, 448
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	84, 203, 441
MvaI	CCWGG	2 cut(s)	84, 441
MwoI	GCNNNNNNNGC	2 cut(s)	278, 324
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	48, 72, 177, 250
NlaIII	CATG	3 cut(s)	60, 106, 146
NmuCI	GTSAC	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	2 cut(s)	60, 106
NspV	TTCGAA	2 cut(s)	116, 133
PaeI	GCATGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	190, 274
PpsI	GAGTC	2 cut(s)	190, 274
Psp1406I	AACGTT	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	82, 439
PspGI	CCWGG	2 cut(s)	82, 439
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	3 cut(s)	200, 314, 323
RsaNI	GTAC	3 cut(s)	199, 313, 322
SaqAI	TTAA	3 cut(s)	243, 261, 448
Sau3AI	GATC	4 cut(s)	48, 72, 177, 250
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	191, 275
ScrFI	CCNGG	3 cut(s)	84, 203, 441
SetI	ASST	5 cut(s)	85, 123, 250, 294, 422
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	2 cut(s)	116, 133
SmlI	CTYRAG	2 cut(s)	68, 107
SmoI	CTYRAG	2 cut(s)	68, 107
SpeI	ACTAGT	1 cut(s)	353
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	222, 325
SspMI	CTAG	2 cut(s)	125, 354
StyD4I	CCNGG	3 cut(s)	82, 201, 439
StyI	CCWWGG	1 cut(s)	388
TaiI	ACGT	2 cut(s)	123, 250
TaqI	TCGA	4 cut(s)	51, 116, 133, 180
TasI	AATT	1 cut(s)	365
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	243, 261, 448
Tru9I	TTAA	3 cut(s)	243, 261, 448
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	365
XceI	RCATGY	2 cut(s)	60, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	2 cut(s)	125, 354
ZrmI	AGTACT	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.