Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020728

Physical Location & Seq

Genomic Coordinates Forward (+)

33662941 .. 33663363

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG296200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATGTTGGTCACTTGAGATCCACCATCATTGGGGACACAATAGCACGCATGCTTGAGTTTTCGAACGTTCAAGTTCTTCGAAGGAATCTTGTAGGTGATTGGGGAACGCAGTTTGGTATTTTGATCGAGTCCCTTGTGGAAAAGTACCCGGAGTTGGAAGATTTTAGCGGAATAGCCATTGGAGATCTGCAGGTTTTGTATAAAGAAGCCAATGATAGATTTAAACGTGATCCCGAGTTTAAGGAGTCAGCACGAAAGGCAGTGGTTAAGCTTCAGAGTGGGAAGTCTAAGTACCGCAAGGCGTGGGAGCAAATCTGTGAAACTAGTAGGAGAGAATTTCAGAAGATTTATCAACGCCTTGGAGTTGAGTTGGAGGAAAAGGGAGAAAGCTTTTACAACCAGTATATTCCTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

140

Amino Acids

16.29

Weight (kDa)

7.81

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	1 - 139	9.9e-46	tRNA synthetases class I (R), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020728)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000898.1_g000027
rosa_rugosa	Rorug04G0459200 Rorug05G0206400
rosa_samantha	Rh7AG292700 Rh7CG312800 Rh7DG296200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AciI	CCGC	2 cut(s)	171, 298
AclI	AACGTT	1 cut(s)	69
AclWI	GGATC	2 cut(s)	15, 227
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	149, 296
AfiI	CCNNNNNNNGG	2 cut(s)	33, 157
AgsI	TTSAA	1 cut(s)	74
AhlI	ACTAGT	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	2 cut(s)	274, 393
AluI	AGCT	2 cut(s)	274, 393
AlwI	GGATC	2 cut(s)	15, 227
Ama87I	CYCGRG	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	338
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	2 cut(s)	65, 82
AvaI	CYCGRG	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	152, 414
BmeT110I	CYCGRG	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	152, 414
Bpu14I	TTCGAA	2 cut(s)	65, 82
BpuEI	CTTGAG	2 cut(s)	37, 77
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	361, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 157
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	361, 413
BseLI	CCNNNNNNNGG	2 cut(s)	33, 157
BseNI	ACTGG	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	2 cut(s)	50, 118
BslI	CCNNNNNNNGG	2 cut(s)	33, 157
BsmFI	GGGAC	2 cut(s)	50, 118
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	2 cut(s)	65, 82
Bsp143I	GATC	4 cut(s)	20, 126, 187, 232
BspACI	CCGC	2 cut(s)	171, 298
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	15, 227
BspT104I	TTCGAA	2 cut(s)	65, 82
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	361, 413
BssMI	GATC	4 cut(s)	20, 126, 187, 232
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	414
BstBI	TTCGAA	2 cut(s)	65, 82
BstC8I	GCNNGC	2 cut(s)	49, 53
BstDEI	CTNAG	1 cut(s)	291
BstKTI	GATC	4 cut(s)	23, 129, 190, 235
BstMBI	GATC	4 cut(s)	20, 126, 187, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	2 cut(s)	8, 55
BstSCI	CCNGG	2 cut(s)	150, 412
BstSFI	CTRYAG	1 cut(s)	191
BstX2I	RGATCY	2 cut(s)	20, 187
BstYI	RGATCY	2 cut(s)	20, 187
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	49, 53
Csp6I	GTAC	2 cut(s)	148, 295
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	2 cut(s)	5, 52
CviJI	RGCY	4 cut(s)	179, 212, 274, 393
CviKI_1	RGCY	4 cut(s)	179, 212, 274, 393
CviQI	GTAC	2 cut(s)	148, 295
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	22, 128, 189, 234
DpnII	GATC	4 cut(s)	20, 126, 187, 232
DraI	TTTAAA	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	2 cut(s)	8, 55
FaiI	YATR	4 cut(s)	6, 53, 204, 408
FaqI	GGGAC	2 cut(s)	50, 118
FatI	CATG	2 cut(s)	4, 51
FspBI	CTAG	1 cut(s)	327
HapII	CCGG	1 cut(s)	152
Hin1II	CATG	2 cut(s)	8, 55
HindIII	AAGCTT	2 cut(s)	272, 391
HinfI	GANTC	3 cut(s)	88, 131, 248
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	279, 345
Hpy188III	TCNNGA	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	78
HpyCH4IV	ACGT	2 cut(s)	69, 229
HpyCH4V	TGCA	2 cut(s)	4, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	69, 229
Hsp92II	CATG	2 cut(s)	8, 55
Kzo9I	GATC	4 cut(s)	20, 126, 187, 232
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	165, 179, 399, 416
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	69, 229
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	4 cut(s)	22, 128, 189, 234
MboI	GATC	4 cut(s)	20, 126, 187, 232
MboII	GAAGA	3 cut(s)	71, 173, 358
MflI	RGATCY	2 cut(s)	20, 187
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	140, 257
MmeI	TCCRAC	2 cut(s)	138, 354
MnlI	CCTC	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	225, 243, 270, 421
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	152, 414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	4 cut(s)	20, 126, 187, 232
NlaIII	CATG	2 cut(s)	8, 55
NmuCI	GTSAC	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 55
NspV	TTCGAA	2 cut(s)	65, 82
PaeI	GCATGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	88
PleI	GAGTC	2 cut(s)	139, 256
PpsI	GAGTC	2 cut(s)	139, 256
Psp1406I	AACGTT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	20, 187
RsaI	GTAC	2 cut(s)	149, 296
RsaNI	GTAC	2 cut(s)	148, 295
SaqAI	TTAA	4 cut(s)	225, 243, 270, 421
Sau3AI	GATC	4 cut(s)	20, 126, 187, 232
SchI	GAGTC	2 cut(s)	140, 257
ScrFI	CCNGG	2 cut(s)	152, 414
SetI	ASST	6 cut(s)	72, 100, 198, 232, 276, 395
SfcI	CTRYAG	1 cut(s)	191
SfuI	TTCGAA	2 cut(s)	65, 82
SmlI	CTYRAG	2 cut(s)	16, 56
SmoI	CTYRAG	2 cut(s)	16, 56
SpeI	ACTAGT	1 cut(s)	326
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	171, 298
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	150, 412
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	2 cut(s)	72, 232
TaqI	TCGA	3 cut(s)	65, 82, 129
TasI	AATT	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	4 cut(s)	225, 243, 270, 421
Tru9I	TTAA	4 cut(s)	225, 243, 270, 421
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	8, 55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.