Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000927.1

Orthogroup ID

OG0022839

Physical Location & Seq

Genomic Coordinates Reverse (-)

29525 .. 34443

Gene Structure 4919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgatttggcagacgattcgtaaaattgtggttgtgctgctaagaacacgcagctggattggaggatccggtctttctttgacaggcgtaatatggagccatgggagagagaagagaagggaagacaaggcagtagagaaagagcttgaaaagcaaaaagcaaaagctagagaagccgccagaaagcttcaggaacaagcaaactctacagacggtggaaagaaggagaagaagaatgtgaagcgttccaagtccaacgaggatgatggtgacattgataacaatgccaaagacccagaggctccatatggcgtgaagaaactgttgtctcttcaaatggacaaagaacacaatccaagtgctgtgcagaagggatggtatgattggtatcagtggtgggagacacaaggcttctctatggcagatgctaaaagctccaaacctccctttgtgaaagtgccgccgcctccgaatgtcactggtgtgcttcatataggccgtgctctcattacttctattgaggacactataattcactggcggcgaatgtccggcagcaacaccttgccgcccggaaggcctggacccgatatgaggcttgagagtcggctgtctcaagcccagaaactcaggagtaggctggagcggctggaatacgccctacgtagggtgcgccctcgtgggcccagcagtcgtggttcaatcttgtccacacattttgaagtcaaagtagcttttgatgttagtgtcagtagctttgtagtcgccggaggtcggccggagactcgccggagttggccggagactcgccggaggttgaccggagactcgccggagttggccggagactcgccggagttggccggagacctcgccggagaagagagagaggatgattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004832 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 Val_tRNA-synt_C tRNA-synt_1

Protein Analysis

300

Amino Acids

33.81

Weight (kDa)

9.74

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	129 - 189	9.8e-13	tRNA synthetases class I (I, L, M and V)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022839)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001367
rosa_multiflora	Rmu_sc0000927.1_g000002
rosa_samantha	Rh7BG399500
rosa_wichuraiana	Rw7G035200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	646
AciI	CCGC	6 cut(s)	177, 461, 464, 541, 569, 646
AclWI	GGATC	2 cut(s)	60, 73
AcoI	YGGCCR	4 cut(s)	776, 797, 840, 861
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	4 cut(s)	594, 666, 667, 774
AgsI	TTSAA	4 cut(s)	149, 335, 702, 722
AjnI	CCWGG	1 cut(s)	580
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	7 cut(s)	54, 145, 167, 187, 435, 734, 756
AluI	AGCT	7 cut(s)	54, 145, 167, 187, 435, 734, 756
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	8 cut(s)	333, 395, 618, 776, 797, 819, 840, 861
AlwI	GGATC	2 cut(s)	60, 73
AoxI	GGCC	7 cut(s)	496, 578, 683, 776, 797, 840, 861
ApaI	GGGCCC	1 cut(s)	687
ApeKI	GCWGC	3 cut(s)	37, 51, 555
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	3 cut(s)	584, 683, 684
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	687
BauI	CACGAG	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	24, 63, 567
BccI	CCATC	2 cut(s)	260, 369
BceAI	ACGGC	1 cut(s)	483
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	8 cut(s)	333, 395, 618, 776, 797, 819, 840, 861
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	207
BglI	GCCNNNNNGGC	1 cut(s)	577
BisI	GCNGC	9 cut(s)	38, 52, 177, 461, 464, 542, 556, 569, 647
BlsI	GCNGC	9 cut(s)	39, 53, 178, 462, 465, 543, 557, 570, 648
Bme1390I	CCNGG	2 cut(s)	573, 582
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	584, 683, 684
BmiI	GGNNCC	5 cut(s)	67, 98, 303, 586, 685
BmrFI	CCNGG	2 cut(s)	573, 582
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	600, 620
BpuMI	CCSGG	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	2 cut(s)	68, 821
Bsc4I	CCNNNNNNNGG	4 cut(s)	594, 666, 667, 774
Bse1I	ACTGG	2 cut(s)	484, 542
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	268, 380, 898
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	594, 666, 667, 774
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	2 cut(s)	484, 542
BseSI	GKGCMC	1 cut(s)	687
BseX3I	CGGCCG	1 cut(s)	776
BseXI	GCAGC	3 cut(s)	24, 63, 567
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	779
BshFI	GGCC	7 cut(s)	498, 580, 685, 778, 799, 842, 863
BsiEI	CGRYCG	1 cut(s)	779
BsiHKAI	GWGCWC	1 cut(s)	505
BslI	CCNNNNNNNGG	4 cut(s)	594, 666, 667, 774
BsmAI	GTCTC	8 cut(s)	333, 395, 618, 776, 797, 819, 840, 861
BsnI	GGCC	7 cut(s)	498, 580, 685, 778, 799, 842, 863
Bso31I	GGTCTC	1 cut(s)	861
Bsp120I	GGGCCC	1 cut(s)	683
Bsp1286I	GDGCHC	2 cut(s)	505, 687
Bsp143I	GATC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	6 cut(s)	177, 461, 464, 541, 569, 646
BspANI	GGCC	7 cut(s)	498, 580, 685, 778, 799, 842, 863
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	5 cut(s)	67, 98, 303, 586, 685
BspPI	GGATC	2 cut(s)	60, 73
BspTNI	GGTCTC	1 cut(s)	861
BsrBI	CCGCTC	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	484, 542
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	215, 324
Bst6I	CTCTTC	3 cut(s)	107, 336, 876
BstBAI	YACGTR	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	41, 629
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	268, 380, 898
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	8 cut(s)	333, 395, 618, 776, 797, 819, 840, 861
BstMBI	GATC	1 cut(s)	65
BstMCI	CGRYCG	1 cut(s)	779
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 173, 577, 646
BstNI	CCWGG	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	571, 580
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	687
BstSNI	TACGTA	1 cut(s)	665
BstV1I	GCAGC	3 cut(s)	24, 63, 567
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	776
BsuRI	GGCC	7 cut(s)	498, 580, 685, 778, 799, 842, 863
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	268, 380, 898
BtsIMutI	CAGTG	3 cut(s)	398, 477, 535
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	3 cut(s)	584, 683, 684
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	41, 629
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	4 cut(s)	776, 797, 840, 861
EagI	CGGCCG	1 cut(s)	776
Eam1104I	CTCTTC	3 cut(s)	107, 336, 876
EarI	CTCTTC	3 cut(s)	107, 336, 876
EclXI	CGGCCG	1 cut(s)	776
Eco105I	TACGTA	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	584
Eco52I	CGGCCG	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	1 cut(s)	104
FatI	CATG	1 cut(s)	100
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	9 cut(s)	38, 52, 177, 461, 464, 542, 556, 569, 647
FokI	GGATG	2 cut(s)	275, 387
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	9 cut(s)	38, 52, 177, 461, 464, 542, 556, 569, 647
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	9 cut(s)	38, 52, 177, 461, 464, 542, 556, 569, 647
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	7 cut(s)	498, 580, 685, 778, 799, 842, 863
HhaI	GCGC	1 cut(s)	675
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	16, 604, 784, 805, 827, 848
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	711, 819
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	2 cut(s)	191, 631
Hpy8I	GTNNAC	2 cut(s)	711, 819
HpyAV	CCTTC	4 cut(s)	111, 217, 364, 570
HpyCH4III	ACNGT	2 cut(s)	215, 324
HpyCH4IV	ACGT	1 cut(s)	664
HpyCH4V	TGCA	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 173, 577, 646
HpyF3I	CTNAG	2 cut(s)	41, 629
HpySE526I	ACGT	1 cut(s)	664
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	673
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	4 cut(s)	96, 307, 440, 643
Lsp1109I	GCAGC	3 cut(s)	24, 63, 567
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	664
MaeIII	GTNAC	2 cut(s)	269, 475
MalI	GATC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	646
MboI	GATC	1 cut(s)	65
MboII	GAAGA	7 cut(s)	124, 134, 241, 244, 323, 328, 893
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	505, 687
MluCI	AATT	2 cut(s)	24, 531
MlyI	GAGTC	5 cut(s)	613, 778, 799, 821, 842
MmeI	TCCRAC	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	573, 582
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	151, 173, 577, 646
NciI	CCSGG	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	100
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	5 cut(s)	67, 98, 303, 586, 685
NmuCI	GTSAC	2 cut(s)	269, 475
OliI	CACNNNNGTG	1 cut(s)	482
PceI	AGGCCT	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	9 cut(s)	39, 53, 178, 462, 465, 543, 557, 570, 648
PleI	GAGTC	5 cut(s)	612, 778, 799, 821, 842
PpsI	GAGTC	5 cut(s)	612, 778, 799, 821, 842
Ppu21I	YACGTR	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	5 cut(s)	67, 98, 303, 586, 685
PspOMI	GGGCCC	1 cut(s)	683
PspPI	GGNCC	3 cut(s)	584, 683, 684
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	482
SatI	GCNGC	9 cut(s)	38, 52, 177, 461, 464, 542, 556, 569, 647
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	3 cut(s)	584, 683, 684
SchI	GAGTC	5 cut(s)	613, 778, 799, 821, 842
ScrFI	CCNGG	2 cut(s)	573, 582
SduI	GDGCHC	2 cut(s)	505, 687
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	599, 615
SmoI	CTYRAG	2 cut(s)	599, 615
SnaBI	TACGTA	1 cut(s)	665
Sse9I	AATT	2 cut(s)	24, 531
SseBI	AGGCCT	1 cut(s)	580
SsiI	CCGC	6 cut(s)	177, 461, 464, 541, 569, 646
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	571, 580
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	215, 324
TaiI	ACGT	1 cut(s)	667
TasI	AATT	2 cut(s)	24, 531
TauI	GCSGC	6 cut(s)	179, 463, 466, 544, 571, 649
TfiI	GAWTC	1 cut(s)	16
TscAI	CASTG	3 cut(s)	398, 484, 542
TseFI	GTSAC	2 cut(s)	269, 475
TseI	GCWGC	3 cut(s)	37, 51, 555
Tsp45I	GTSAC	2 cut(s)	269, 475
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	398, 484, 542
VpaK11BI	GGWCC	1 cut(s)	584
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.