Rmu_sc0000998.1_g000006

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0023059
Physical Location & Seq
Forward (+)
18854 .. 20112
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000006.1.cds

Sequence Viewer

Length: 720 bp
atggagaagttgaagtcgtttctgagcaacagatggctggtttttgtggcggcaatgtgggtgcaatcctgtgcgggaattgggtacttgtttgggagcatatcaccggtgatcaagagctcgttgaactataatcagaggcagattgccaggcttggtgtggctaaggacctcggggacagtgttgggtttttggctgggaccttgtgtgaggttttgcctttgtgggctgctttgcttattggcgctttgaagaattttgtaggctatggctgggtttggcttattgtcactggtagagctcctcctctgcctctctgggctgtgagctatggggctcattgggcaattgtgccagctgctgcctctgaattgtttggcttgaaaaagtttggggctttatacaatttcctcacactggcaaaccctgctggtagtttagtcttttctggtctgattgctagcagtatatatgaccgtgaagcagagaagcaagctcatcagcctcatctcgtgcatcagattccaggatcaattttccaagggattcctggacaggatgcaccgaagtgtcatggtgcgatatgcttcttcttaacttcggtaataatgtccgtattctgtgttattgcatttcttttgagcatgattctggtacgtaggactaagattgtatataccaatctctatggaaagtcccgttcatctgggctttcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

239

Amino Acids

25.94

Weight (kDa)

9.56

Isoelectric Point (pI)

28.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023059)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8488167.1_g000002 Rmu_co8515361.1_g000001 Rmu_sc0000998.1_g000006 Rmu_sc0003558.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 74
AclWI GGATC 1 cut(s) 538
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 2 cut(s) 86, 657
AfiI CCNNNNNNNGG 1 cut(s) 418
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 4 cut(s) 13, 127, 253, 385
AjnI CCWGG 3 cut(s) 149, 526, 550
AleI CACNNNNGTG 1 cut(s) 568
AluBI AGCT 5 cut(s) 120, 302, 330, 359, 497
AluI AGCT 5 cut(s) 120, 302, 330, 359, 497
Alw21I GWGCWC 2 cut(s) 122, 304
AlwI GGATC 1 cut(s) 538
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 230, 359, 362
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 169, 201
AsuHPI GGTGA 2 cut(s) 96, 121
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 169, 201
BanII GRGCYC 3 cut(s) 122, 304, 340
BauI CACGAG 1 cut(s) 512
Bbv12I GWGCWC 2 cut(s) 122, 304
BbvI GCAGC 3 cut(s) 217, 346, 349
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 3 cut(s) 151, 528, 552
BclI TGATCA 1 cut(s) 111
BfaI CTAG 1 cut(s) 462
BfoI RGCGCY 1 cut(s) 249
BisI GCNGC 4 cut(s) 51, 231, 360, 363
BlsI GCNGC 4 cut(s) 52, 232, 361, 364
Bme1390I CCNGG 3 cut(s) 151, 528, 552
Bme18I GGWCC 2 cut(s) 169, 201
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 169, 201
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 3 cut(s) 151, 528, 552
BmsI GCATC 2 cut(s) 526, 550
BmtI GCTAGC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 659
BsaJI CCNNGG 2 cut(s) 172, 541
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 298, 423
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 3 cut(s) 151, 528, 552
BseDI CCNNGG 2 cut(s) 172, 541
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 298, 423
BseRI GAGGAG 2 cut(s) 294, 297
BseXI GCAGC 3 cut(s) 217, 346, 349
BseYI CCCAGC 2 cut(s) 197, 273
BshTI ACCGGT 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 122, 304
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 3 cut(s) 191, 214, 682
BslI CCNNNNNNNGG 1 cut(s) 418
BsmFI GGGAC 3 cut(s) 191, 214, 682
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 122, 304, 340
Bsp143I GATC 2 cut(s) 111, 530
BspACI CCGC 2 cut(s) 50, 74
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 2 cut(s) 298, 423
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 172, 541
BssMI GATC 2 cut(s) 111, 530
BssSI CACGAG 1 cut(s) 512
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 151, 528, 552
Bst4CI ACNGT 2 cut(s) 182, 479
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 357, 463, 495
BstDEI CTNAG 3 cut(s) 23, 165, 666
BstF5I GGATG 1 cut(s) 565
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 2 cut(s) 114, 533
BstMBI GATC 2 cut(s) 111, 530
BstMWI GCNNNNNNNGC 2 cut(s) 344, 428
BstNI CCWGG 3 cut(s) 151, 528, 552
BstSCI CCNGG 3 cut(s) 149, 526, 550
BstSNI TACGTA 1 cut(s) 659
BstV1I GCAGC 3 cut(s) 217, 346, 349
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 187, 291, 416
Cac8I GCNNGC 3 cut(s) 357, 463, 495
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 169, 201
Csp6I GTAC 2 cut(s) 85, 656
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 2 cut(s) 575, 646
CviQI GTAC 2 cut(s) 85, 656
DdeI CTNAG 3 cut(s) 23, 165, 666
DpnI GATC 2 cut(s) 113, 532
DpnII GATC 2 cut(s) 111, 530
Ecl136II GAGCTC 2 cut(s) 120, 302
Eco105I TACGTA 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 541
Eco24I GRGCYC 3 cut(s) 122, 304, 340
Eco47I GGWCC 2 cut(s) 169, 201
Eco53kI GAGCTC 2 cut(s) 120, 302
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 2 cut(s) 120, 302
EcoO109I RGGNCCY 2 cut(s) 169, 201
EcoRII CCWGG 3 cut(s) 149, 526, 550
EcoT14I CCWWGG 1 cut(s) 541
EcoT38I GRGCYC 3 cut(s) 122, 304, 340
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 2 cut(s) 578, 649
FaqI GGGAC 3 cut(s) 191, 214, 682
FatI CATG 2 cut(s) 574, 645
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 51, 231, 360, 363
FokI GGATG 1 cut(s) 572
FriOI GRGCYC 3 cut(s) 122, 304, 340
Fsp4HI GCNGC 4 cut(s) 51, 231, 360, 363
FspBI CTAG 1 cut(s) 462
GlaI GCGC 1 cut(s) 247
GluI GCNGC 4 cut(s) 51, 231, 360, 363
GsaI CCCAGC 2 cut(s) 201, 277
HaeII RGCGCY 1 cut(s) 249
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 578, 649
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 3 cut(s) 523, 547, 649
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 96, 121
Hpy188I TCNGA 5 cut(s) 24, 138, 370, 456, 522
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 182, 479
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 4 cut(s) 64, 517, 563, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 428
HpyF3I CTNAG 3 cut(s) 23, 165, 666
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 2 cut(s) 578, 649
HspAI GCGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 2 cut(s) 111, 530
LmnI GCTCC 2 cut(s) 96, 307
Lsp1109I GCAGC 3 cut(s) 217, 346, 349
LweI GCATC 2 cut(s) 526, 550
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 113, 532
MboI GATC 2 cut(s) 111, 530
MboII GAAGA 2 cut(s) 265, 583
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 3 cut(s) 122, 304, 340
MluCI AATT 6 cut(s) 78, 256, 348, 371, 406, 534
MnlI CCTC 9 cut(s) 132, 182, 205, 315, 318, 324, 376, 422, 516
MseI TTAA 1 cut(s) 596
MslI CAYNNNNRTG 1 cut(s) 568
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 3 cut(s) 151, 528, 552
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 3 cut(s) 151, 528, 552
MwoI GCNNNNNNNGC 2 cut(s) 344, 428
NdeII GATC 2 cut(s) 111, 530
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 2 cut(s) 578, 649
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 568
PfeI GAWTC 3 cut(s) 523, 547, 649
PfoI TCCNGGA 2 cut(s) 526, 550
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 4 cut(s) 52, 232, 361, 364
Ppu21I YACGTR 1 cut(s) 659
PpuMI RGGWCCY 2 cut(s) 169, 201
Psp124BI GAGCTC 2 cut(s) 122, 304
Psp5II RGGWCCY 2 cut(s) 169, 201
Psp6I CCWGG 3 cut(s) 149, 526, 550
PspFI CCCAGC 2 cut(s) 197, 273
PspGI CCWGG 3 cut(s) 149, 526, 550
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 169, 201
PspPPI RGGWCCY 2 cut(s) 169, 201
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 2 cut(s) 86, 657
RsaNI GTAC 2 cut(s) 85, 656
RseI CAYNNNNRTG 1 cut(s) 568
SacI GAGCTC 2 cut(s) 122, 304
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 4 cut(s) 51, 231, 360, 363
Sau3AI GATC 2 cut(s) 111, 530
Sau96I GGNCC 2 cut(s) 169, 201
ScrFI CCNGG 3 cut(s) 151, 528, 552
SduI GDGCHC 3 cut(s) 122, 304, 340
SetI ASST 9 cut(s) 122, 174, 206, 216, 304, 332, 361, 499, 661
SfaNI GCATC 2 cut(s) 526, 550
SgrAI CRCCGGYG 1 cut(s) 106
SinI GGWCC 2 cut(s) 169, 201
SmiMI CAYNNNNRTG 1 cut(s) 568
SnaBI TACGTA 1 cut(s) 659
Sse9I AATT 6 cut(s) 78, 256, 348, 371, 406, 534
SsiI CCGC 2 cut(s) 50, 74
SspMI CTAG 1 cut(s) 462
SstI GAGCTC 2 cut(s) 122, 304
StyD4I CCNGG 3 cut(s) 149, 526, 550
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 182, 479
TaiI ACGT 1 cut(s) 661
TasI AATT 6 cut(s) 78, 256, 348, 371, 406, 534
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 3 cut(s) 523, 547, 649
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 3 cut(s) 187, 298, 423
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 230, 359, 362
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 693, 705
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 3 cut(s) 187, 298, 423
VpaK11BI GGWCC 2 cut(s) 169, 201
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 548
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.