Rmu_sc0003558.1_g000008

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003558.1
OG0023059
Physical Location & Seq
Forward (+)
49066 .. 49434
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003558.1_g000008.1.cds

Sequence Viewer

Length: 369 bp
atggagaagttgaagtcgtttctgagcaacagatggctggtttttgtggcggcaatgtgggtgcaatcctgtgcgggaattgggtacttgtttgggagcatatcaccggtgatcaagagctcgttgaactataatcagaggcagattgccaggcttggtgtggctaaggacctcggggacagtgttgggtttttggctgggaccttgtgtgaggttttgcctttgtgggctgctttgcttattggcgctttgaagaattttgtaggctatggctgggtttggcttattgtcactggtagagctcctcctctgcctctctgggctgtgagtattcttaagtctctgactttacttcttttctttaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

122

Amino Acids

13.42

Weight (kDa)

9.86

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023059)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8488167.1_g000002 Rmu_co8515361.1_g000001 Rmu_sc0000998.1_g000006 Rmu_sc0003558.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 74
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 86
AflII CTTAAG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 3 cut(s) 13, 127, 253
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 120, 302
AluI AGCT 2 cut(s) 120, 302
Alw21I GWGCWC 2 cut(s) 122, 304
Alw26I GTCTC 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 169, 201
AsuHPI GGTGA 2 cut(s) 96, 121
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 169, 201
BanII GRGCYC 2 cut(s) 122, 304
Bbv12I GWGCWC 2 cut(s) 122, 304
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 2 cut(s) 51, 231
BlsI GCNGC 2 cut(s) 52, 232
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 2 cut(s) 169, 201
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 169, 201
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 294, 297
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 2 cut(s) 197, 273
BshTI ACCGGT 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 122, 304
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 191, 214
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 191, 214
BsoBI CYCGRG 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 122, 304
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 50, 74
BspCNI CTCAG 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 23, 165
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 187, 291
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 169, 201
Csp6I GTAC 1 cut(s) 85
CspAI ACCGGT 1 cut(s) 106
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 2 cut(s) 23, 165
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Ecl136II GAGCTC 2 cut(s) 120, 302
Eco24I GRGCYC 2 cut(s) 122, 304
Eco47I GGWCC 2 cut(s) 169, 201
Eco53kI GAGCTC 2 cut(s) 120, 302
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 2 cut(s) 120, 302
EcoO109I RGGNCCY 2 cut(s) 169, 201
EcoRII CCWGG 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 122, 304
FaiI YATR 3 cut(s) 101, 132, 270
FaqI GGGAC 2 cut(s) 191, 214
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 51, 231
FriOI GRGCYC 2 cut(s) 122, 304
Fsp4HI GCNGC 2 cut(s) 51, 231
GlaI GCGC 1 cut(s) 247
GluI GCNGC 2 cut(s) 51, 231
GsaI CCCAGC 2 cut(s) 201, 277
HaeII RGCGCY 1 cut(s) 249
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 96, 121
Hpy188I TCNGA 3 cut(s) 24, 138, 345
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 23, 165
HspAI GCGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 96, 307
LpnPI CCDG 9 cut(s) 23, 82, 120, 136, 163, 183, 259, 279, 304
Lsp1109I GCAGC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 289
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 122, 304
MluCI AATT 2 cut(s) 78, 256
MnlI CCTC 6 cut(s) 132, 182, 205, 315, 318, 324
MseI TTAA 2 cut(s) 336, 363
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 289
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 2 cut(s) 52, 232
PpuMI RGGWCCY 2 cut(s) 169, 201
Psp124BI GAGCTC 2 cut(s) 122, 304
Psp5II RGGWCCY 2 cut(s) 169, 201
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 2 cut(s) 197, 273
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 169, 201
PspPPI RGGWCCY 2 cut(s) 169, 201
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacI GAGCTC 2 cut(s) 122, 304
SaqAI TTAA 2 cut(s) 336, 363
SatI GCNGC 2 cut(s) 51, 231
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 169, 201
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 2 cut(s) 122, 304
SetI ASST 5 cut(s) 122, 174, 206, 216, 304
SgrAI CRCCGGYG 1 cut(s) 106
SinI GGWCC 2 cut(s) 169, 201
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 2 cut(s) 78, 256
SsiI CCGC 2 cut(s) 50, 74
SstI GAGCTC 2 cut(s) 122, 304
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 182
TasI AATT 2 cut(s) 78, 256
TauI GCSGC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 336, 363
Tru9I TTAA 2 cut(s) 336, 363
TscAI CASTG 2 cut(s) 187, 298
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 2 cut(s) 187, 298
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 169, 201
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.