Rmu_sc0001068.1_g000011

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001068.1
OG0021842
Physical Location & Seq
Reverse (-)
43978 .. 45923
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001068.1_g000011.1.cds

Sequence Viewer

Length: 960 bp
atggctagcattgctaaagatgctcttagagcaactttaccagcctcgccaaaattgattctacgctattttagcgagcttgagaagcgaaaaatagcaaaatcaggccttcagcagactcgctatatcgttcgccaaaatgggcataatgataatatgttttcaacgtttggttatcctgtatctggtgatgctattagctatagtcagaaccctattcaaagtcaagttgttgttcaaagtgaacccaaaaccacaaagaaagctaaaagagccaagaatttctccattcaagaagacaaccttcttgtgtctgcttggctcaatactatccttgatccagcaataggaaatgatcaaaaaggtgctgcttattggaaaagaatttgggagcatttttatgaggagaagaactttgaactggagtgtgatcgtaatcagggttctctcatgcatcgctggtctggaattcaactggatgtgaacaaattttgtggctattatgctgaaattgaaaggacaagagcaagtggtacaactgaacaagatatgattgtggaagccaaacaaaagtttaggagggagcgaggatacaactttacatatgagcattgttggcatgtgttgaagttccacccgaaatggaacttggaactctctagggaaaaaccaaagaaaactcatgctacggttcctgctacttcgtctcctatcactccatctgctagcccagatacaatagatttagctgatggcaatgaggatgagcaatttcaactgatgtatgatgcagaacaagagaacattaagctgaggaaacaagaacttgaaattcaagttcgaaaagaagataatgcaacaatggcaattggtacttctacaatggaaccaatgcgggcagaatattttagaggacttcaacaggaaatcatagcaaaaagagttgctaacggaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

319

Amino Acids

36.78

Weight (kDa)

8.55

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021842)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001068.1_g000011
rosa_samantha Rh6AG153900 Rh6CG149700 Rh7BG232900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 895
AclI AACGTT 1 cut(s) 167
AclWI GGATC 1 cut(s) 332
AcsI RAATTY 5 cut(s) 280, 384, 468, 488, 831
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 2 cut(s) 535, 874
AfiI CCNNNNNNNGG 2 cut(s) 185, 347
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 5 cut(s) 79, 201, 266, 749, 811
AluI AGCT 5 cut(s) 79, 201, 266, 749, 811
Alw26I GTCTC 1 cut(s) 711
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 5 cut(s) 280, 384, 468, 488, 831
AsuHPI GGTGA 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 841
AsuNHI GCTAGC 2 cut(s) 5, 725
BbsI GAAGAC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 812
BbvI GCAGC 1 cut(s) 355
BccI CCATC 2 cut(s) 727, 746
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 711
BfaI CTAG 4 cut(s) 6, 660, 726, 958
BfmI CTRYAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 584
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 693, 888
BmsI GCATC 4 cut(s) 10, 181, 463, 778
BmtI GCTAGC 2 cut(s) 9, 729
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 812
Bpu14I TTCGAA 1 cut(s) 841
BpuEI CTTGAG 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 347
Bse1I ACTGG 2 cut(s) 426, 480
Bse3DI GCAATG 2 cut(s) 9, 763
Bse8I GATNNNNATC 1 cut(s) 435
BseGI GGATG 2 cut(s) 484, 769
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 185, 347
BseMI GCAATG 2 cut(s) 9, 763
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 2 cut(s) 426, 480
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 185, 347
BsmAI GTCTC 1 cut(s) 711
BsmBI CGTCTC 1 cut(s) 711
BsnI GGCC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 841
Bsp143I GATC 3 cut(s) 337, 355, 430
BspACI CCGC 1 cut(s) 895
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 693, 888
BspOI GCTAGC 2 cut(s) 9, 729
BspPI GGATC 1 cut(s) 332
BspT104I TTCGAA 1 cut(s) 841
BsrDI GCAATG 2 cut(s) 9, 763
BsrI ACTGG 2 cut(s) 426, 480
BssMI GATC 3 cut(s) 337, 355, 430
Bst4CI ACNGT 1 cut(s) 691
BstBI TTCGAA 1 cut(s) 841
BstC8I GCNNGC 4 cut(s) 7, 77, 727, 897
BstDEI CTNAG 2 cut(s) 26, 812
BstF5I GGATG 2 cut(s) 484, 769
BstKTI GATC 3 cut(s) 340, 358, 433
BstMAI GTCTC 1 cut(s) 711
BstMBI GATC 3 cut(s) 337, 355, 430
BstMWI GCNNNNNNNGC 8 cut(s) 11, 20, 29, 72, 85, 272, 616, 863
BstNSI RCATGY 1 cut(s) 623
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 303
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 2 cut(s) 484, 769
Cac8I GCNNGC 4 cut(s) 7, 77, 727, 897
Csp6I GTAC 2 cut(s) 534, 873
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 3 cut(s) 451, 620, 683
CviQI GTAC 2 cut(s) 534, 873
DdeI CTNAG 2 cut(s) 26, 812
DpnI GATC 3 cut(s) 339, 357, 432
DpnII GATC 3 cut(s) 337, 355, 430
Eco147I AGGCCT 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 456
Esp3I CGTCTC 1 cut(s) 711
FaeI CATG 3 cut(s) 454, 623, 686
FalI AAGNNNNNCTT 4 cut(s) 9, 41, 288, 320
FatI CATG 3 cut(s) 450, 619, 682
FauI CCCGC 1 cut(s) 888
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 491, 776
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 4 cut(s) 6, 660, 726, 958
GluI GCNGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 3 cut(s) 454, 623, 686
HinfI GANTC 2 cut(s) 58, 118
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 245, 484
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 293, 465
Hpy8I GTNNAC 2 cut(s) 245, 484
HpyAV CCTTC 2 cut(s) 119, 314
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 454, 791, 857
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 20, 29, 72, 85, 272, 616, 863
HpyF3I CTNAG 2 cut(s) 26, 812
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 3 cut(s) 454, 623, 686
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 337, 355, 430
LmnI GCTCC 2 cut(s) 391, 583
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 4 cut(s) 10, 181, 463, 778
MaeI CTAG 4 cut(s) 6, 660, 726, 958
MaeII ACGT 1 cut(s) 167
MalI GATC 3 cut(s) 339, 357, 432
MboI GATC 3 cut(s) 337, 355, 430
MboII GAAGA 3 cut(s) 308, 421, 860
MfeI CAATTG 1 cut(s) 867
MluCI AATT 9 cut(s) 53, 280, 384, 468, 488, 510, 770, 831, 867
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 7 cut(s) 55, 397, 573, 581, 754, 807, 905
Mph1103I ATGCAT 1 cut(s) 456
MseI TTAA 1 cut(s) 807
MslI CAYNNNNRTG 1 cut(s) 399
MunI CAATTG 1 cut(s) 867
MwoI GCNNNNNNNGC 8 cut(s) 11, 20, 29, 72, 85, 272, 616, 863
NdeI CATATG 1 cut(s) 604
NdeII GATC 3 cut(s) 337, 355, 430
NheI GCTAGC 2 cut(s) 5, 725
NlaIII CATG 3 cut(s) 454, 623, 686
NlaIV GGNNCC 2 cut(s) 693, 888
NsiI ATGCAT 1 cut(s) 456
NspI RCATGY 1 cut(s) 623
NspV TTCGAA 1 cut(s) 841
PceI AGGCCT 1 cut(s) 108
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 370
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 693, 888
PsrI GAACNNNNNNTAC 2 cut(s) 427, 459
RsaI GTAC 2 cut(s) 535, 874
RsaNI GTAC 2 cut(s) 534, 873
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 3 cut(s) 337, 355, 430
SchI GAGTC 1 cut(s) 112
SetI ASST 8 cut(s) 81, 170, 203, 268, 306, 367, 751, 813
SfaNI GCATC 4 cut(s) 10, 181, 463, 778
SfcI CTRYAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 841
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 9 cut(s) 53, 280, 384, 468, 488, 510, 770, 831, 867
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 1 cut(s) 895
SspI AATATT 1 cut(s) 905
SspMI CTAG 4 cut(s) 6, 660, 726, 958
StuI AGGCCT 1 cut(s) 108
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 841
TasI AATT 9 cut(s) 53, 280, 384, 468, 488, 510, 770, 831, 867
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TseI GCWGC 1 cut(s) 368
XapI RAATTY 5 cut(s) 280, 384, 468, 488, 831
XceI RCATGY 1 cut(s) 623
XspI CTAG 4 cut(s) 6, 660, 726, 958
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.