Rh7BG232900

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0021842
Physical Location & Seq
Reverse (-)
20352557 .. 20357203
4647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG232900.1

Sequence Viewer

Length: 441 bp
ATGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCTAAGAAAACTCATGCTACGGTTCCTGCTACTTCGTCTCTTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAACTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTTTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

146

Amino Acids

16.83

Weight (kDa)

8.76

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 17 - 137 1.2e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021842)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001068.1_g000011
rosa_samantha Rh6AG153900 Rh6CG149700 Rh7BG232900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 6 cut(s) 79, 215, 343, 350, 380, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 3 cut(s) 200, 290, 415
AluI AGCT 3 cut(s) 200, 290, 415
Alw26I GTCTC 3 cut(s) 162, 231, 321
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 260, 308
ApoI RAATTY 1 cut(s) 435
AsuNHI GCTAGC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 247, 320
BccI CCATC 2 cut(s) 178, 197
BciVI GTATCC 1 cut(s) 35
BcoDI GTCTC 3 cut(s) 162, 231, 321
BfaI CTAG 2 cut(s) 111, 177
BfmI CTRYAG 1 cut(s) 246
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 2 cut(s) 261, 309
BlsI GCNGC 2 cut(s) 262, 310
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 1 cut(s) 382
BmtI GCTAGC 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 214, 226
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 2 cut(s) 214, 226
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 247, 320
BshFI GGCC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 3 cut(s) 162, 231, 321
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 244
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 214, 226
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 123, 416
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 373
BstMAI GTCTC 3 cut(s) 162, 231, 321
BstMWI GCNNNNNNNGC 2 cut(s) 67, 281
BstNSI RCATGY 2 cut(s) 74, 356
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 247, 320
BstXI CCANNNNNNTGG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 178
CviAII CATG 4 cut(s) 71, 134, 231, 353
CviJI RGCY 8 cut(s) 14, 180, 200, 244, 260, 290, 311, 415
CviKI_1 RGCY 8 cut(s) 14, 180, 200, 244, 260, 290, 311, 415
DdeI CTNAG 2 cut(s) 123, 416
Eco130I CCWWGG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 4 cut(s) 74, 137, 234, 356
FatI CATG 4 cut(s) 70, 133, 230, 352
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 261, 309
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 261, 309
FspBI CTAG 2 cut(s) 111, 177
GluI GCNGC 2 cut(s) 261, 309
HaeIII GGCC 1 cut(s) 244
Hin1II CATG 4 cut(s) 74, 137, 234, 356
HinfI GANTC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 209, 274
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 281
HpyF3I CTNAG 2 cut(s) 123, 416
Hsp92II CATG 4 cut(s) 74, 137, 234, 356
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 159, 195, 287
Lsp1109I GCAGC 2 cut(s) 247, 320
LweI GCATC 1 cut(s) 382
MaeI CTAG 2 cut(s) 111, 177
MluCI AATT 3 cut(s) 320, 374, 435
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 5 cut(s) 24, 32, 234, 358, 411
MseI TTAA 2 cut(s) 411, 439
MwoI GCNNNNNNNGC 2 cut(s) 67, 281
NdeI CATATG 1 cut(s) 55
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 4 cut(s) 74, 137, 234, 356
NlaIV GGNNCC 1 cut(s) 144
NspI RCATGY 2 cut(s) 74, 356
PceI AGGCCT 1 cut(s) 244
PkrI GCNGC 2 cut(s) 262, 310
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 144
SaqAI TTAA 2 cut(s) 411, 439
SatI GCNGC 2 cut(s) 261, 309
SchI GAGTC 1 cut(s) 233
SetI ASST 5 cut(s) 124, 202, 272, 292, 417
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 320, 374, 435
SseBI AGGCCT 1 cut(s) 244
SspMI CTAG 2 cut(s) 111, 177
StuI AGGCCT 1 cut(s) 244
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 142
TasI AATT 3 cut(s) 320, 374, 435
Tru1I TTAA 2 cut(s) 411, 439
Tru9I TTAA 2 cut(s) 411, 439
TseI GCWGC 2 cut(s) 260, 308
XagI CCTNNNNNAGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 435
XceI RCATGY 2 cut(s) 74, 356
XspI CTAG 2 cut(s) 111, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.