Rh6CG149700

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0021842
Physical Location & Seq
Reverse (-)
19547404 .. 19548442
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG149700.1

Sequence Viewer

Length: 957 bp
ATGTTTTCAACGTTTGGTTATCCTGTATCTGGTGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGTTGTTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCTTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATTATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGAGCATTTTTATGAGGAGAAGAACTTTGAACTGGAGTGTGATCGTAATCAGGGTTCTCTCATGCATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATTATGCTGAAATTGAAAGGACAAGAGCAAGTGGTACAACTGAACAAGATATGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCAAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGGAAAAACCAAAGAAAACTCATGCTACGGTTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTCATGGCAATGTTGAAGGCAATGAGTATCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGGAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAAGATAATGCAACAATGGCAATTGATACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCATAGCAAAAAGAGTTGCTAACGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

318

Amino Acids

36.62

Weight (kDa)

6.53

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 148 - 309 3.2e-21 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021842)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001068.1_g000011
rosa_samantha Rh6AG153900 Rh6CG149700 Rh7BG232900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 892
AclI AACGTT 1 cut(s) 11
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 5 cut(s) 124, 228, 312, 332, 828
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 3 cut(s) 29, 191, 669
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 5 cut(s) 45, 110, 593, 683, 808
AluI AGCT 5 cut(s) 45, 110, 593, 683, 808
Alw26I GTCTC 2 cut(s) 555, 714
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 635
ApeKI GCWGC 3 cut(s) 212, 653, 701
ApoI RAATTY 5 cut(s) 124, 228, 312, 332, 828
AsuHPI GGTGA 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 838
AsuNHI GCTAGC 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 809
BbvI GCAGC 3 cut(s) 199, 640, 713
BccI CCATC 1 cut(s) 571
BciVI GTATCC 2 cut(s) 428, 630
BcoDI GTCTC 2 cut(s) 555, 714
BfaI CTAG 3 cut(s) 504, 570, 955
BfmI CTRYAG 2 cut(s) 46, 639
BfuI GTATCC 2 cut(s) 428, 630
BisI GCNGC 3 cut(s) 213, 654, 702
BlsI GCNGC 3 cut(s) 214, 655, 703
BmiI GGNNCC 2 cut(s) 537, 885
BmsI GCATC 3 cut(s) 25, 307, 775
BmtI GCTAGC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 809
Bpu14I TTCGAA 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 191, 669
Bse1I ACTGG 2 cut(s) 270, 324
Bse3DI GCAATG 2 cut(s) 607, 619
Bse8I GATNNNNATC 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 2 cut(s) 328, 766
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 3 cut(s) 29, 191, 669
BseMI GCAATG 2 cut(s) 607, 619
BseMII CTCAG 1 cut(s) 800
BseNI ACTGG 2 cut(s) 270, 324
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 3 cut(s) 199, 640, 713
BshFI GGCC 1 cut(s) 637
BslI CCNNNNNNNGG 3 cut(s) 29, 191, 669
BsmAI GTCTC 2 cut(s) 555, 714
BsmBI CGTCTC 1 cut(s) 555
BsnI GGCC 1 cut(s) 637
Bsp119I TTCGAA 1 cut(s) 838
Bsp143I GATC 2 cut(s) 181, 274
BspACI CCGC 1 cut(s) 892
BspANI GGCC 1 cut(s) 637
BspCNI CTCAG 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 537, 885
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 607, 619
BsrI ACTGG 2 cut(s) 270, 324
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 2 cut(s) 181, 274
BssT1I CCWWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 838
BstC8I GCNNGC 2 cut(s) 571, 894
BstDEI CTNAG 1 cut(s) 809
BstENI CCTNNNNNAGG 1 cut(s) 667
BstF5I GGATG 2 cut(s) 328, 766
BstKTI GATC 2 cut(s) 184, 277
BstMAI GTCTC 2 cut(s) 555, 714
BstMBI GATC 2 cut(s) 181, 274
BstMWI GCNNNNNNNGC 4 cut(s) 116, 460, 674, 860
BstNSI RCATGY 2 cut(s) 467, 749
BstSFI CTRYAG 2 cut(s) 46, 639
BstV1I GCAGC 3 cut(s) 199, 640, 713
BstV2I GAAGAC 1 cut(s) 147
BstXI CCANNNNNNTGG 1 cut(s) 664
BsuI GTATCC 2 cut(s) 428, 630
BsuRI GGCC 1 cut(s) 637
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 328, 766
Cac8I GCNNGC 2 cut(s) 571, 894
Csp6I GTAC 1 cut(s) 378
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 6 cut(s) 295, 464, 527, 596, 624, 746
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 1 cut(s) 809
DpnI GATC 2 cut(s) 183, 276
DpnII GATC 2 cut(s) 181, 274
Eco130I CCWWGG 1 cut(s) 663
Eco147I AGGCCT 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 663
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 6 cut(s) 298, 467, 530, 599, 627, 749
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 6 cut(s) 294, 463, 526, 595, 623, 745
FauI CCCGC 1 cut(s) 885
FauNDI CATATG 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 213, 654, 702
FokI GGATG 2 cut(s) 335, 773
Fsp4HI GCNGC 3 cut(s) 213, 654, 702
FspBI CTAG 3 cut(s) 504, 570, 955
GluI GCNGC 3 cut(s) 213, 654, 702
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 637
Hin1II CATG 6 cut(s) 298, 467, 530, 599, 627, 749
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 89, 328
Hpy188I TCNGA 3 cut(s) 54, 712, 735
Hpy188III TCNNGA 2 cut(s) 137, 309
Hpy8I GTNNAC 2 cut(s) 89, 328
HpyAV CCTTC 3 cut(s) 158, 602, 667
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 3 cut(s) 298, 788, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 460, 674, 860
HpyF3I CTNAG 1 cut(s) 809
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 6 cut(s) 298, 467, 530, 599, 627, 749
Kzo9I GATC 2 cut(s) 181, 274
LmnI GCTCC 2 cut(s) 235, 427
Lsp1109I GCAGC 3 cut(s) 199, 640, 713
LweI GCATC 3 cut(s) 25, 307, 775
MaeI CTAG 3 cut(s) 504, 570, 955
MaeII ACGT 1 cut(s) 11
MalI GATC 2 cut(s) 183, 276
MboI GATC 2 cut(s) 181, 274
MboII GAAGA 3 cut(s) 152, 265, 857
MfeI CAATTG 1 cut(s) 864
MnlI CCTC 7 cut(s) 241, 417, 627, 682, 751, 804, 902
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 2 cut(s) 243, 600
MunI CAATTG 1 cut(s) 864
MwoI GCNNNNNNNGC 4 cut(s) 116, 460, 674, 860
NdeI CATATG 1 cut(s) 448
NdeII GATC 2 cut(s) 181, 274
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 6 cut(s) 298, 467, 530, 599, 627, 749
NlaIV GGNNCC 2 cut(s) 537, 885
NsiI ATGCAT 1 cut(s) 300
NspI RCATGY 2 cut(s) 467, 749
NspV TTCGAA 1 cut(s) 838
PceI AGGCCT 1 cut(s) 637
PkrI GCNGC 3 cut(s) 214, 655, 703
Psp1406I AACGTT 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 537, 885
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
RseI CAYNNNNRTG 2 cut(s) 243, 600
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 3 cut(s) 213, 654, 702
Sau3AI GATC 2 cut(s) 181, 274
SetI ASST 9 cut(s) 14, 47, 112, 150, 211, 595, 665, 685, 810
SfaNI GCATC 3 cut(s) 25, 307, 775
SfcI CTRYAG 2 cut(s) 46, 639
SfuI TTCGAA 1 cut(s) 838
SmiMI CAYNNNNRTG 2 cut(s) 243, 600
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 1 cut(s) 892
SspI AATATT 1 cut(s) 902
SspMI CTAG 3 cut(s) 504, 570, 955
StuI AGGCCT 1 cut(s) 637
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 838
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TseI GCWGC 3 cut(s) 212, 653, 701
XagI CCTNNNNNAGG 1 cut(s) 667
XapI RAATTY 5 cut(s) 124, 228, 312, 332, 828
XceI RCATGY 2 cut(s) 467, 749
XspI CTAG 3 cut(s) 504, 570, 955
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.