Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0025506

Physical Location & Seq

Genomic Coordinates Forward (+)

83812 .. 84642

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgacaccggagagagttaccggtaagcgtagaggtcgatctgaggagggagtgactatctccccaaagaagttaaagcttagcttggctgtaggcaagcataatctgaatttggagacggaaaacctagggttggtctctttgcaggaggaggatcccctcttcgtcaatgacgagctcatctcggactacggcacgccgtttcccgagccctgtatcgatcgcattgcctacactgtcggaaagtatgaagctttggcttggctgactggagggctaagatgcttcgttgggctgggcttgttggtagtctggaacaacaaggcatctaagatttcgtttgcaccgaaagtgtacccatatgacaatctacaagtggagctcgccggagaaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.61

Weight (kDa)

5.46

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0025506)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001290.1_g000020 Rmu_sc0005307.1_g000015
rosa_roxburghii	Rroxscaffold_1G00009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	149, 162
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgeI	ACCGGT	1 cut(s)	20
AluBI	AGCT	5 cut(s)	79, 84, 178, 254, 382
AluI	AGCT	5 cut(s)	79, 84, 178, 254, 382
Alw21I	GWGCWC	2 cut(s)	180, 384
Alw26I	GTCTC	2 cut(s)	110, 142
AlwI	GGATC	2 cut(s)	149, 162
Ama87I	CYCGRG	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	109
AsiGI	ACCGGT	1 cut(s)	20
AspA2I	CCTAGG	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	206
AvrII	CCTAGG	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	3 cut(s)	180, 213, 384
Bbv12I	GWGCWC	2 cut(s)	180, 384
BceAI	ACGGC	2 cut(s)	184, 208
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	2 cut(s)	110, 142
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	90
BlnI	CCTAGG	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	2 cut(s)	272, 335
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	7, 20
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	2 cut(s)	59, 164
BseYI	CCCAGC	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	180, 384
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	8, 21, 387
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	110, 142
BsmBI	CGTCTC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	180, 213, 384
Bsp143I	GATC	3 cut(s)	38, 154, 220
Bsp1720I	GCTNAGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	149, 162
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	38, 154, 220
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	238, 396
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	98, 197, 384
BstDEI	CTNAG	4 cut(s)	42, 80, 278, 330
BstKTI	GATC	3 cut(s)	41, 157, 223
BstMAI	GTCTC	2 cut(s)	110, 142
BstMBI	GATC	3 cut(s)	38, 154, 220
BstMCI	CGRYCG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	98, 197, 384
Cfr10I	RCCGGY	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	20
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	4 cut(s)	42, 80, 278, 330
DpnI	GATC	3 cut(s)	40, 156, 222
DpnII	GATC	3 cut(s)	38, 154, 220
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	2 cut(s)	178, 382
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	3 cut(s)	180, 213, 384
Eco31I	GGTCTC	1 cut(s)	142
Eco53kI	GAGCTC	2 cut(s)	178, 382
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	2 cut(s)	178, 382
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	3 cut(s)	180, 213, 384
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	110
FaiI	YATR	4 cut(s)	102, 249, 361, 363
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FauNDI	CATATG	1 cut(s)	361
FriOI	GRGCYC	3 cut(s)	180, 213, 384
FspBI	CTAG	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	291
HapII	CCGG	3 cut(s)	8, 21, 387
HindIII	AAGCTT	2 cut(s)	77, 252
HpaII	CCGG	3 cut(s)	8, 21, 387
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	43, 108, 187, 242
Hpy188III	TCNNGA	2 cut(s)	206, 313
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	238, 396
HpyCH4V	TGCA	2 cut(s)	145, 344
HpyF3I	CTNAG	4 cut(s)	42, 80, 278, 330
Kzo9I	GATC	3 cut(s)	38, 154, 220
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	21, 34, 131, 226, 255, 281, 298
LweI	GCATC	2 cut(s)	272, 335
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	16, 52
MalI	GATC	3 cut(s)	40, 156, 222
MboI	GATC	3 cut(s)	38, 154, 220
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	180, 213, 384
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	26, 37, 40, 142, 145, 170, 266
MseI	TTAA	1 cut(s)	74
MspI	CCGG	3 cut(s)	8, 21, 387
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	38, 154, 220
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 344
PinAI	ACCGGT	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	223
Psp124BI	GAGCTC	2 cut(s)	180, 384
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	154
PvuI	CGATCG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SacI	GAGCTC	2 cut(s)	180, 384
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	3 cut(s)	38, 154, 220
SduI	GDGCHC	3 cut(s)	180, 213, 384
SetI	ASST	7 cut(s)	37, 81, 86, 129, 180, 256, 384
SfaNI	GCATC	2 cut(s)	272, 335
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	2 cut(s)	180, 384
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	238, 396
TaqI	TCGA	2 cut(s)	37, 219
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	264
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.