Rroxscaffold_1G00009580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0025506
Physical Location & Seq
Forward (+)
12125751 .. 12126193
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009580.1

Sequence Viewer

Length: 270 bp
ATGGTGCTGCCACCGGTGATGGCTCGGACTGCTGCAAGTGGGCGCCGGAGTGTCGCATTTGGTTCTAACTCTATGTTGTCCGAGAGGATCACTAGGAAGCGGAAGTCTCGAATTGAGGTGGAGTTTACTATATTTCTGAAAAAATTGAAGCCGAGTTTGGCGGTGGGGAAGAAGAACCCGAACATGGAGCTTGAAAATATGGGCTTGGTTACGGCGGTACAAGCTAATGCGGTGCAGATCCCGTCAAAAGGAAGAGAGGAAGACCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.87

Weight (kDa)

10.97

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025506)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001290.1_g000020 Rmu_sc0005307.1_g000015
rosa_roxburghii Rroxscaffold_1G00009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AciI CCGC 4 cut(s) 100, 161, 215, 230
AclWI GGATC 2 cut(s) 95, 232
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 184, 248
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 2 cut(s) 148, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 2 cut(s) 190, 224
AluI AGCT 2 cut(s) 190, 224
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 95, 232
ApeKI GCWGC 2 cut(s) 7, 32
AsiGI ACCGGT 1 cut(s) 13
AspLEI GCGC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 28
BanI GGYRCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 19
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 46
BisI GCNGC 2 cut(s) 8, 33
BlsI GCNGC 2 cut(s) 9, 34
BmiI GGNNCC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 248
Bse118I RCCGGY 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 184, 248
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 42
BshTI ACCGGT 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 46
BslI CCNNNNNNNGG 2 cut(s) 184, 248
BsmAI GTCTC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 87, 237
BspACI CCGC 4 cut(s) 100, 161, 215, 230
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 95, 232
BspT107I GGYRCC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 2 cut(s) 87, 237
BssNI GRCGYC 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 2 cut(s) 90, 240
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 87, 237
BstMWI GCNNNNNNNGC 2 cut(s) 29, 221
BstV1I GCAGC 1 cut(s) 19
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 13
Csp6I GTAC 1 cut(s) 218
CspAI ACCGGT 1 cut(s) 13
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 23, 151, 190, 204, 224
CviKI_1 RGCY 5 cut(s) 23, 151, 190, 204, 224
CviQI GTAC 1 cut(s) 218
DinI GGCGCC 1 cut(s) 44
DpnI GATC 2 cut(s) 89, 239
DpnII GATC 2 cut(s) 87, 237
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
FaeI CATG 1 cut(s) 187
FaiI YATR 4 cut(s) 74, 131, 185, 200
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 8, 33
Fsp4HI GCNGC 2 cut(s) 8, 33
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 8, 33
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 2 cut(s) 14, 46
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HpaII CCGG 2 cut(s) 14, 46
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 27, 82, 138
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 35, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 221
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 43
KasI GGCGCC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 87, 237
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 27, 59
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 89, 239
MboI GATC 2 cut(s) 87, 237
MboII GAAGA 3 cut(s) 181, 184, 264
MflI RGATCY 1 cut(s) 237
MluCI AATT 2 cut(s) 111, 143
Mly113I GGCGCC 1 cut(s) 43
MnlI CCTC 3 cut(s) 78, 109, 250
MspI CCGG 2 cut(s) 14, 46
MwoI GCNNNNNNNGC 2 cut(s) 29, 221
NarI GGCGCC 1 cut(s) 43
NdeII GATC 2 cut(s) 87, 237
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 2 cut(s) 9, 34
PluTI GGCGCC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SatI GCNGC 2 cut(s) 8, 33
Sau3AI GATC 2 cut(s) 87, 237
SetI ASST 3 cut(s) 120, 192, 226
SfoI GGCGCC 1 cut(s) 44
SgrAI CRCCGGYG 1 cut(s) 13
Sse9I AATT 2 cut(s) 111, 143
SsiI CCGC 4 cut(s) 100, 161, 215, 230
SspDI GGCGCC 1 cut(s) 42
SspMI CTAG 1 cut(s) 93
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 111, 143
TseI GCWGC 2 cut(s) 7, 32
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.