Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005307.1

Orthogroup ID

OG0025506

Physical Location & Seq

Genomic Coordinates Forward (+)

60102 .. 60932

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005307.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgacaccggagagagttaccggtaagcgtagaggtcgatctgaggagggagtgactatctccccaaagaagttaaagtttagcttggctgtaggcaagcataatctaaatttggagacggaaaacctagggttgctcatctccgactacggcaagccgtttcccgagccctgtattgatcgcattgcctacactgtcggaaagtacgaagctttggcttggctgactggagggctaagctgcttcgttgtgctgggcttgttggtagtctggaacaacaaggcatctaagattccgtttgcaccgaaagtgtacccatatgacaatctacaagtggagctcgccggagaaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.03

Weight (kDa)

8.91

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025506)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001290.1_g000020 Rmu_sc0005307.1_g000015
rosa_roxburghii	Rroxscaffold_1G00009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	2 cut(s)	206, 314
AgeI	ACCGGT	1 cut(s)	20
AluBI	AGCT	4 cut(s)	84, 212, 240, 340
AluI	AGCT	4 cut(s)	84, 212, 240, 340
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	109
AsiGI	ACCGGT	1 cut(s)	20
AspA2I	CCTAGG	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	171, 342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	142, 166
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	241
BlnI	CCTAGG	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	7, 20
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	253
BshTI	ACCGGT	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	3 cut(s)	8, 21, 345
BsmAI	GTCTC	1 cut(s)	110
BsmBI	CGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	171, 342
Bsp143I	GATC	2 cut(s)	38, 178
Bsp1720I	GCTNAGC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	38, 178
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	196, 354
BstC8I	GCNNGC	3 cut(s)	98, 155, 342
BstDEI	CTNAG	3 cut(s)	42, 236, 288
BstKTI	GATC	2 cut(s)	41, 181
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	38, 178
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	98, 155, 342
Cfr10I	RCCGGY	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	205, 313
CspAI	ACCGGT	1 cut(s)	20
CviQI	GTAC	2 cut(s)	205, 313
DdeI	CTNAG	3 cut(s)	42, 236, 288
DpnI	GATC	2 cut(s)	40, 180
DpnII	GATC	2 cut(s)	38, 178
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	2 cut(s)	171, 342
Eco53kI	GAGCTC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	171, 342
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	110
FaiI	YATR	3 cut(s)	102, 319, 321
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	241
FriOI	GRGCYC	2 cut(s)	171, 342
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	249
HapII	CCGG	3 cut(s)	8, 21, 345
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	3 cut(s)	8, 21, 345
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	43, 145, 200
Hpy188III	TCNNGA	2 cut(s)	164, 271
Hpy8I	GTNNAC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	196, 354
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	42, 236, 288
Kzo9I	GATC	2 cut(s)	38, 178
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	21, 34, 184, 213, 239, 256
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	2 cut(s)	16, 52
MalI	GATC	2 cut(s)	40, 180
MboI	GATC	2 cut(s)	38, 178
MhlI	GDGCHC	2 cut(s)	171, 342
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	168, 178
MnlI	CCTC	4 cut(s)	26, 37, 40, 224
MseI	TTAA	1 cut(s)	74
MspI	CCGG	3 cut(s)	8, 21, 345
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	38, 178
NmuCI	GTSAC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	292
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	206, 314
RsaNI	GTAC	2 cut(s)	205, 313
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	2 cut(s)	38, 178
SduI	GDGCHC	2 cut(s)	171, 342
SetI	ASST	6 cut(s)	37, 86, 129, 214, 242, 342
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	109
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	196, 354
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	52
TspGWI	ACGGA	2 cut(s)	134, 285
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.