Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001311.1

Orthogroup ID

OG0012524

Physical Location & Seq

Genomic Coordinates Reverse (-)

42024 .. 48505

Gene Structure 6482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4299 bp

atggctgacattgttgatatatcgtcattagtttcttcttcgttagttcgagttatagatttcagggtttttatatcctcatggtgcaatgtgaacttagattttgcttgccataatgagttcaatgcacagccttatttgctggataaattaaaggaatgtggatctgtactaagtggtgtcaaaggtaatgttaagtgtttatatgctgttaatgaagactgcagaaccactgtttggacataccagaatggtaatgaggatggggcattagattcttttcaacctgatgaaaaactcaagaaaaagaagatttcatatgttaggaaacgacgagatgtatacaagactctcggactgggttctgaagctgaatcagcttctgtgctggcatttggaagccttttcactgctccttacaaaggttctgagctacttattgatatccatgaatctccaagagatcaaaggataggaagtctaatggagaagattgagtttcttccatttgctcctgaaattgtgagtgcaggaaagaagtttgctttggataccataaaggctccttttctatgtgcacagcttcgattattagacgggcagttcaagaatcaccggaaggctacttttcaagggctaaaacaaaagttggatgctttgatgcagagccctctccccattcatatctttgtgatgactgatcttcctgaaagtaattggactgaaaattacttgggggatttggctagagattcaaatcagtttaaactgtttttcctgaaagaaagagatgatttggtaatacaaacagctacaagaattgttgatgcaggccatggcttgaagtttgggtctgttgcaaatattcatgatggaactgatcagattaagaaggattgcccttctgcagtaatgcccgatgttcttctatacatagagcaaactgtttgcagttgtgcgtctcttggatttgttgggactgcaggatcaactattgcagggagcatagagctaatgagaaagtttggccatggcttgaagtttgggtctgttgcaaatatttatgatggaactgatcagattaagaaggattgcccttctgcagtaatacccgatgttcttctatacatagagcaaactgtttgcagttgtgcgtctcttggatttgttgggactgcaggatcaactattgcagggagcatagagctaatgagaaaggtttttggcgagcaattaatcaagtgtgtgcagctggttcatcagtggattcatgcccttgtgttcatccaaatcctacagccaattcaagtgggttttagtagagaaatggattcaaaagccaggagaagagcttctatcgagaatggggaagccggggaggacttggttctcgctacgttgattgggaatggagatgacctgggtcctattgtcaggcatgcatttgagatggggaggccggaatcgctccttcagcagctcaagcatgtggtgagaaagaaggaagtcgagattgaggatctgtgtaagactcattacgaggagttcattcttgcagttgacgagcttcgtggggtgttggtggatgctgaagagctgaaaggcgagctctctagtgataattttaagttgcaagaggttggcagtactttgttgattaaacttgaggagcttctcgagtcttattcaataaaaaagaatgtggctgaagctatcaaaatgtccaagaattgtgtacaggtgctggagctctgcgttaagtttaacaagcacatatccgaaggccagttttacccagctttgaaaaccttagatctgattgagaaaagttacttgaagaatgttcctgtcaggacgctgagaatggttatagagaagaggattccattgattaagttgcacatcgagaagaaaggttttagtagagaaatggattcaaaagccaggagaagagcttctatcgagaatggggaagccggggaggacttggttctcgctacgttgattgggaatggagatgacctaggtcctattgtcaggcatgcatttgagatggggaggccagaatcgctccttcagcagctcaagcatgtggtgagaaagaaggaagtcgagattgaggatctgtgtaagactcattatgaggagttcattcttgcagttgacgagcttcgtggggtgttggtggatgctgaagagctgaagggcgagctctctagtgataattttaagttgcaagaggttggcagtactttgttgattaaacttgaggagcttctcgagtcttattcaattaaaaagaatgtggctgaagctatcaaaatgtccaagaattgtgtacaggtgctggagctctgcgttaagtttaacaagcacatatccgaaggccagttttacccagctttgaaaaccttagatctaattgagaaaagttacttgaagaatgttcctgtcaggacgctgagaatggttatagagaagaggattccattgattaagttgcacattgagaagaaagtaactagtcagttcaatgaatggctggttcagataagaagttctgcaaaggatattggacaaacagcaataggccaagctgcttctgcgcgccagagagatgaggaaatgctggatcggcaaaggaaagctgaggaacagaatcttccggggttgggagattttgcgtatactttagaggttgaagagattgaagaagaatcagttctaaaggttgacctaactcctctatacagggcttatcacatccaaagttgcctaggaatccaagagcagttttgggaatattactatagaaatcgattgttgcagcttaattcagacttacagatctcttcaacacagccctttgttgaatcttatcaaacatttttggctcaaattgcaggatacttcatagtggaggatcgggtcctgaggactgctggaggcctacgtttaggtgaacaagttgaaacaatgtgggaaacagctgtagggaaaatgaaatctctgttagaggtgcagttctcccagatgaattctgcaacccatcttctcttggtgaaggattatgtgactcttctcggctgtactcttagacaatatgggtatgaagtgggaccacttcttgagacacttaacaagagccgagacaaataccacgagcttctttcagaagagtgtcgtaaacaaattgttaatgttattgccaatgatacctatgagcagatggtgttgaaaaaggaaagtgactatgaaaataatgtcttgtccttcaatctccagacaacagatatcacaccggcttttccattcattgcaccattctcctccacagtacctgatgcctgccgaattgtcagatcattcatcaaagggtctgttgattacttgacctatgggacaaatactaatgtttatgatgttgtgaagaaatatttggataaattcttgatagatgtgttaaatgaggtgatacttaatactattcaaggtggcagcattggtgtctctcaggccatgcagattgctgcgaacatatctgtacttgaaggagcttgtgactttttccttcgacatgcagcccaactatgtgggattccaagtcgttcagttgagaggcctcaagctggtttaactgctaaggtagttctaaagacttctagggatgaagcttatcttgctttgctgaatttggtgaatgcgaagttggatcagttcatgcaactaacagaaaatatcaattggacttcagaggaaccaacacagggtgaaaatgagtacatgaatgaagttgttatttaccttgatactcttatgtccactgcgcaacaaatcttacctttggatgctctgtacaaggttgggagtggggctcttgatcacatttccaactctatagtatcagcttttcttagcggtagcataaagcggttcaatgctaatgcagttatgagtatcaacaatgatttgaagatggtggagtcttttgcagatgagaggtttcacagtactggcttgagcgaaatttacaaagatggaagttttagaggttgcttgatagaggcaagacaactgataaaccttttgtcaagcagtcagccagagaatttcatgaatcccgtgataagggagaaaaactacaatgctttggattataaaaaggtggccagtatctgcgagaaattcaaggattctgctgatgggatttttggaagcctttcgaacaagaataacaagcaaaatgctcgtaagaaatcaatggacatgcttaagaaaagattgaaggacttcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005938 GO:0007154 GO:0008037 GO:0008150 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009875 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0048468 GO:0048544 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060321 GO:0060560 GO:0071840 GO:0071944 GO:0099023 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec15

Protein Analysis

1432

Amino Acids

161.08

Weight (kDa)

5.81

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXOC6_Sec15_N	PF20651	493 - 641	5.9e-44	Exocyst complex component EXOC6/Sec15, N-terminal
EXOC6_Sec15_N	PF20651	694 - 863	2.6e-53	Exocyst complex component EXOC6/Sec15, N-terminal
Sec15_C	PF04091	1041 - 1395	5.2e-101	Exocyst complex subunit Sec15 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56640
fragaria_vesca	FvH4_5g19480 FvH4_5g19480 FvH4_5g19480
malus_domestica	MD13G1069100.v1.1 MD16G1069400.v1.1
prunus_persica	Prupe.1G277600_v2.0.a1
pyrus_communis	pycom13g06190 pycom16g06060
rosa_chinensis	RchiOBHm_Chr7g0204061
rosa_laevigata	RLG00000003491
rosa_multiflora	Rmu_sc0001311.1_g000011
rosa_roxburghii	Rroxscaffold_3G00253390
rosa_rugosa	Rorug07G0080300
rosa_samantha	Rh7AG210300 Rh7BG208900 Rh7CG222700 Rh7DG217000
rosa_wichuraiana	Rw7G018310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4158
Acc16I	TGCGCA	1 cut(s)	3828
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccI	GTMKAC	2 cut(s)	342, 2687
AccII	CGCG	1 cut(s)	2608
AciI	CCGC	2 cut(s)	3918, 3931
AclWI	GGATC	8 cut(s)	172, 994, 1189, 1527, 2130, 2640, 2931, 3720
AcoI	YGGCCR	2 cut(s)	1027, 4167
AcsI	RAATTY	6 cut(s)	3037, 3446, 3691, 4026, 4108, 4184
AcuI	CTGAAG	9 cut(s)	387, 1457, 1611, 1728, 2060, 2214, 2222, 2331, 3735
AdeI	CACNNNGTG	1 cut(s)	3770
AfiI	CCNNNNNNNGG	6 cut(s)	237, 422, 2672, 3629, 3767, 4128
AflII	CTTAAG	1 cut(s)	4271
AhlI	ACTAGT	1 cut(s)	2522
AjnI	CCWGG	3 cut(s)	1340, 1419, 1943
AjuI	GAANNNNNNNTTGG	8 cut(s)	220, 252, 530, 562, 3422, 3454, 3692, 3724
Alw21I	GWGCWC	5 cut(s)	580, 1611, 1752, 2214, 2355
Alw26I	GTCTC	5 cut(s)	966, 1161, 3125, 3144, 3514
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	8 cut(s)	172, 994, 1189, 1527, 2130, 2640, 2931, 3720
AlwNI	CAGNNNCTG	5 cut(s)	383, 1744, 2347, 3341, 4176
Ama87I	CYCGRG	2 cut(s)	1676, 2279
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	8 cut(s)	1249, 1477, 2080, 2597, 2827, 3498, 3530, 3581
ApoI	RAATTY	6 cut(s)	3037, 3446, 3691, 4026, 4108, 4184
AseI	ATTAAT	1 cut(s)	1235
Asp700I	GAANNNNTTC	5 cut(s)	1351, 1954, 2721, 4219, 4289
AspA2I	CCTAGG	2 cut(s)	2023, 2776
AspLEI	GCGC	3 cut(s)	2608, 2610, 3829
AspS9I	GGNCC	4 cut(s)	1424, 2027, 2929, 3119
AsuC2I	CCSGG	3 cut(s)	1375, 1978, 2667
AsuHPI	GGTGA	8 cut(s)	605, 1504, 2107, 2972, 3073, 3484, 3709, 3782
AsuII	TTCGAA	1 cut(s)	4223
AvaI	CYCGRG	2 cut(s)	1676, 2279
AvaII	GGWCC	4 cut(s)	1424, 2027, 2929, 3119
AvrII	CCTAGG	2 cut(s)	2023, 2776
AxyI	CCTNAGG	1 cut(s)	2933
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	2 cut(s)	1029, 4169
BanII	GRGCYC	6 cut(s)	671, 1611, 1752, 2214, 2355, 3877
BauI	CACGAG	1 cut(s)	3161
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	5 cut(s)	580, 1611, 1752, 2214, 2355
BbvCI	CCTCAGC	1 cut(s)	2649
BbvI	GCAGC	8 cut(s)	1261, 1489, 2092, 2584, 2839, 3510, 3517, 3593
BcgI	CGANNNNNNTGC	2 cut(s)	4229, 4263
BciT130I	CCWGG	3 cut(s)	1342, 1421, 1945
BciVI	GTATCC	2 cut(s)	544, 2900
BclI	TGATCA	3 cut(s)	880, 1075, 3880
BcnI	CCSGG	3 cut(s)	1375, 1978, 2667
BcoDI	GTCTC	5 cut(s)	966, 1161, 3125, 3144, 3514
BcuI	ACTAGT	1 cut(s)	2522
BfaI	CTAG	7 cut(s)	747, 1614, 2024, 2217, 2523, 2777, 3663
BfmI	CTRYAG	9 cut(s)	223, 906, 981, 1101, 1176, 1295, 2809, 2991, 3897
BfrI	CTTAAG	1 cut(s)	4271
BfuI	GTATCC	2 cut(s)	544, 2900
BglII	AGATCT	3 cut(s)	1813, 2416, 2847
BisI	GCNGC	8 cut(s)	1250, 1478, 2081, 2598, 2828, 3499, 3531, 3582
BlnI	CCTAGG	2 cut(s)	2023, 2776
BlsI	GCNGC	8 cut(s)	1251, 1479, 2082, 2599, 2829, 3500, 3532, 3583
BmcAI	AGTACT	3 cut(s)	1648, 2251, 4012
Bme1390I	CCNGG	6 cut(s)	1342, 1375, 1421, 1945, 1978, 2667
Bme18I	GGWCC	4 cut(s)	1424, 2027, 2929, 3119
BmeT110I	CYCGRG	2 cut(s)	1676, 2279
BmgT120I	GGNCC	4 cut(s)	1424, 2027, 2929, 3119
BmiI	GGNNCC	5 cut(s)	564, 1425, 2930, 3120, 3759
BmrFI	CCNGG	6 cut(s)	1342, 1375, 1421, 1945, 1978, 2667
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	7 cut(s)	643, 651, 817, 1576, 2179, 3334, 3838
BmuI	ACTGGG	1 cut(s)	368
BoxI	GACNNNNGTC	2 cut(s)	1422, 2025
BpiI	GAAGAC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	3859, 3891
BpmI	CTGGAG	4 cut(s)	1766, 2369, 2964, 3266
Bpu10I	CCTNAGC	2 cut(s)	2649, 3642
Bpu14I	TTCGAA	1 cut(s)	4223
BpuEI	CTTGAG	8 cut(s)	284, 1466, 1685, 2069, 2288, 3149, 3609, 4039
BpuMI	CCSGG	3 cut(s)	1375, 1978, 2667
Bsa29I	ATCGAT	1 cut(s)	2818
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	8 cut(s)	835, 1030, 1374, 1420, 1977, 2023, 2666, 2776
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	6 cut(s)	237, 422, 2672, 3629, 3767, 4128
Bse118I	RCCGGY	1 cut(s)	3301
Bse1I	ACTGG	5 cut(s)	363, 1786, 2389, 4018, 4170
Bse21I	CCTNAGG	1 cut(s)	2933
Bse3DI	GCAATG	2 cut(s)	94, 3315
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	3 cut(s)	1342, 1421, 1945
BseCI	ATCGAT	1 cut(s)	2818
BseDI	CCNNGG	8 cut(s)	835, 1030, 1374, 1420, 1977, 2023, 2666, 2776
BseGI	GGATG	8 cut(s)	268, 658, 1284, 1591, 2194, 2763, 3673, 3853
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	6 cut(s)	237, 422, 2672, 3629, 3767, 4128
BseMI	GCAATG	2 cut(s)	94, 3315
BseMII	CTCAG	6 cut(s)	420, 1850, 2453, 2640, 2924, 3527
BseNI	ACTGG	5 cut(s)	363, 1786, 2389, 4018, 4170
BsePI	GCGCGC	1 cut(s)	2606
BseRI	GAGGAG	6 cut(s)	1556, 1682, 2159, 2285, 2733, 3319
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	8 cut(s)	1261, 1489, 2092, 2584, 2839, 3510, 3517, 3593
BseYI	CCCAGC	2 cut(s)	1795, 2398
BsgI	GTGCAG	3 cut(s)	549, 1268, 3041
Bsh1236I	CGCG	1 cut(s)	2608
BshVI	ATCGAT	1 cut(s)	2818
BsiHKAI	GWGCWC	5 cut(s)	580, 1611, 1752, 2214, 2355
BsiHKCI	CYCGRG	2 cut(s)	1676, 2279
BsiSI	CCGG	6 cut(s)	616, 1374, 1460, 1977, 2666, 3302
BslFI	GGGAC	4 cut(s)	991, 1186, 3132, 3415
BslI	CCNNNNNNNGG	6 cut(s)	237, 422, 2672, 3629, 3767, 4128
BsmAI	GTCTC	5 cut(s)	966, 1161, 3125, 3144, 3514
BsmBI	CGTCTC	2 cut(s)	966, 1161
BsmFI	GGGAC	4 cut(s)	991, 1186, 3132, 3415
BsmI	GAATGC	1 cut(s)	3706
BsoBI	CYCGRG	2 cut(s)	1676, 2279
Bsp119I	TTCGAA	1 cut(s)	4223
Bsp1286I	GDGCHC	7 cut(s)	580, 671, 1611, 1752, 2214, 2355, 3877
Bsp1407I	TGTACA	3 cut(s)	1735, 2338, 3855
Bsp19I	CCATGG	2 cut(s)	835, 1030
BspACI	CCGC	2 cut(s)	3918, 3931
BspCNI	CTCAG	6 cut(s)	421, 1851, 2454, 2641, 2925, 3526
BspDI	ATCGAT	1 cut(s)	2818
BspFNI	CGCG	1 cut(s)	2608
BspHI	TCATGA	2 cut(s)	868, 4113
BspLI	GGNNCC	5 cut(s)	564, 1425, 2930, 3120, 3759
BspMAI	CTGCAG	5 cut(s)	227, 910, 985, 1105, 1180
BspPI	GGATC	8 cut(s)	172, 994, 1189, 1527, 2130, 2640, 2931, 3720
BspQI	GCTCTTC	4 cut(s)	1342, 1587, 1945, 2190
BspT104I	TTCGAA	1 cut(s)	4223
BspTI	CTTAAG	1 cut(s)	4271
BsrDI	GCAATG	2 cut(s)	94, 3315
BsrFI	RCCGGY	1 cut(s)	3301
BsrGI	TGTACA	3 cut(s)	1735, 2338, 3855
BsrI	ACTGG	5 cut(s)	363, 1786, 2389, 4018, 4170
BssAI	RCCGGY	1 cut(s)	3301
BssECI	CCNNGG	8 cut(s)	835, 1030, 1374, 1420, 1977, 2023, 2666, 2776
BssHII	GCGCGC	1 cut(s)	2606
BssNAI	GTATAC	2 cut(s)	343, 2688
BssSI	CACGAG	1 cut(s)	3161
BssT1I	CCWWGG	4 cut(s)	835, 1030, 2023, 2776
Bst1107I	GTATAC	2 cut(s)	343, 2688
Bst2BI	CACGAG	1 cut(s)	3161
Bst2UI	CCWGG	3 cut(s)	1342, 1421, 1945
Bst4CI	ACNGT	6 cut(s)	235, 771, 946, 1141, 3337, 4010
BstAFI	CTTAAG	1 cut(s)	4271
BstAUI	TGTACA	3 cut(s)	1735, 2338, 3855
BstBI	TTCGAA	1 cut(s)	4223
BstDSI	CCRYGG	2 cut(s)	835, 1030
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	8 cut(s)	268, 658, 1284, 1591, 2194, 2763, 3673, 3853
BstFNI	CGCG	1 cut(s)	2608
BstHHI	GCGC	3 cut(s)	2608, 2610, 3829
BstMAI	GTCTC	5 cut(s)	966, 1161, 3125, 3144, 3514
BstNI	CCWGG	3 cut(s)	1342, 1421, 1945
BstNSI	RCATGY	6 cut(s)	1442, 1490, 2045, 2093, 3581, 4270
BstPAI	GACNNNNGTC	2 cut(s)	1422, 2025
BstSCI	CCNGG	6 cut(s)	1340, 1373, 1419, 1943, 1976, 2665
BstSFI	CTRYAG	9 cut(s)	223, 906, 981, 1101, 1176, 1295, 2809, 2991, 3897
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	1 cut(s)	2608
BstV1I	GCAGC	8 cut(s)	1261, 1489, 2092, 2584, 2839, 3510, 3517, 3593
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	6 cut(s)	164, 1519, 1813, 2122, 2416, 2847
BstXI	CCANNNNNNTGG	1 cut(s)	3593
BstYI	RGATCY	6 cut(s)	164, 1519, 1813, 2122, 2416, 2847
BstZ17I	GTATAC	2 cut(s)	343, 2688
Bsu15I	ATCGAT	1 cut(s)	2818
Bsu36I	CCTNAGG	1 cut(s)	2933
BsuI	GTATCC	2 cut(s)	544, 2900
BsuTUI	ATCGAT	1 cut(s)	2818
BtgI	CCRYGG	2 cut(s)	835, 1030
BtsCI	GGATG	8 cut(s)	268, 658, 1284, 1591, 2194, 2763, 3673, 3853
BtsI	GCAGTG	2 cut(s)	408, 3822
BtsIMutI	CAGTG	4 cut(s)	231, 408, 1268, 3822
CaiI	CAGNNNCTG	5 cut(s)	383, 1744, 2347, 3341, 4176
CciI	TCATGA	2 cut(s)	868, 4113
CfoI	GCGC	3 cut(s)	2608, 2610, 3829
Cfr10I	RCCGGY	1 cut(s)	3301
Cfr13I	GGNCC	4 cut(s)	1424, 2027, 2929, 3119
ClaI	ATCGAT	1 cut(s)	2818
CseI	GACGC	4 cut(s)	948, 1143, 1864, 2467
CspCI	CAANNNNNGTGG	2 cut(s)	1290, 1325
DraI	TTTAAA	1 cut(s)	766
DraIII	CACNNNGTG	1 cut(s)	3770
EaeI	YGGCCR	2 cut(s)	1027, 4167
Ecl136II	GAGCTC	4 cut(s)	1609, 1750, 2212, 2353
Eco130I	CCWWGG	4 cut(s)	835, 1030, 2023, 2776
Eco147I	AGGCCT	2 cut(s)	2949, 3622
Eco24I	GRGCYC	6 cut(s)	671, 1611, 1752, 2214, 2355, 3877
Eco32I	GATATC	2 cut(s)	445, 3295
Eco47I	GGWCC	4 cut(s)	1424, 2027, 2929, 3119
Eco53kI	GAGCTC	4 cut(s)	1609, 1750, 2212, 2353
Eco57I	CTGAAG	9 cut(s)	387, 1457, 1611, 1728, 2060, 2214, 2222, 2331, 3735
Eco81I	CCTNAGG	1 cut(s)	2933
Eco88I	CYCGRG	2 cut(s)	1676, 2279
EcoICRI	GAGCTC	4 cut(s)	1609, 1750, 2212, 2353
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	3 cut(s)	1424, 2027, 2929
EcoRI	GAATTC	1 cut(s)	3037
EcoRII	CCWGG	3 cut(s)	1340, 1419, 1943
EcoRV	GATATC	2 cut(s)	445, 3295
EcoT14I	CCWWGG	4 cut(s)	835, 1030, 2023, 2776
EcoT22I	ATGCAT	2 cut(s)	1444, 2047
EcoT38I	GRGCYC	6 cut(s)	671, 1611, 1752, 2214, 2355, 3877
ErhI	CCWWGG	4 cut(s)	835, 1030, 2023, 2776
Esp3I	CGTCTC	2 cut(s)	966, 1161
FalI	AAGNNNNNCTT	2 cut(s)	3663, 3695
FaqI	GGGAC	4 cut(s)	991, 1186, 3132, 3415
FauNDI	CATATG	1 cut(s)	319
FbaI	TGATCA	3 cut(s)	880, 1075, 3880
FblI	GTMKAC	2 cut(s)	342, 2687
Fnu4HI	GCNGC	8 cut(s)	1250, 1478, 2081, 2598, 2828, 3499, 3531, 3582
FokI	GGATG	8 cut(s)	275, 665, 1271, 1598, 2201, 2750, 3680, 3860
FriOI	GRGCYC	6 cut(s)	671, 1611, 1752, 2214, 2355, 3877
Fsp4HI	GCNGC	8 cut(s)	1250, 1478, 2081, 2598, 2828, 3499, 3531, 3582
FspBI	CTAG	7 cut(s)	747, 1614, 2024, 2217, 2523, 2777, 3663
FspI	TGCGCA	1 cut(s)	3828
GlaI	GCGC	3 cut(s)	2607, 2609, 3828
GluI	GCNGC	8 cut(s)	1250, 1478, 2081, 2598, 2828, 3499, 3531, 3582
GsaI	CCCAGC	2 cut(s)	1799, 2402
GsuI	CTGGAG	4 cut(s)	1766, 2369, 2964, 3266
HapII	CCGG	6 cut(s)	616, 1374, 1460, 1977, 2666, 3302
HgaI	GACGC	4 cut(s)	948, 1143, 1864, 2467
HhaI	GCGC	3 cut(s)	2608, 2610, 3829
Hin6I	GCGC	3 cut(s)	2606, 2608, 3827
HinP1I	GCGC	3 cut(s)	2606, 2608, 3827
HincII	GTYRAC	3 cut(s)	1561, 2164, 2734
HindII	GTYRAC	3 cut(s)	1561, 2164, 2734
HindIII	AAGCTT	1 cut(s)	3672
HpaII	CCGG	6 cut(s)	616, 1374, 1460, 1977, 2666, 3302
HphI	GGTGA	8 cut(s)	605, 1504, 2107, 2972, 3073, 3484, 3709, 3782
Hpy99I	CGWCG	1 cut(s)	336
HpyCH4III	ACNGT	6 cut(s)	235, 771, 946, 1141, 3337, 4010
HpyCH4IV	ACGT	3 cut(s)	1397, 2000, 2953
HpySE526I	ACGT	3 cut(s)	1397, 2000, 2953
HspAI	GCGC	3 cut(s)	2606, 2608, 3827
Ksp22I	TGATCA	3 cut(s)	880, 1075, 3880
LguI	GCTCTTC	4 cut(s)	1342, 1587, 1945, 2190
Lsp1109I	GCAGC	8 cut(s)	1261, 1489, 2092, 2584, 2839, 3510, 3517, 3593
LweI	GCATC	7 cut(s)	643, 651, 817, 1576, 2179, 3334, 3838
MaeI	CTAG	7 cut(s)	747, 1614, 2024, 2217, 2523, 2777, 3663
MaeII	ACGT	3 cut(s)	1397, 2000, 2953
MaeIII	GTNAC	6 cut(s)	1829, 2432, 2518, 3073, 3248, 3560
MfeI	CAATTG	1 cut(s)	3742
MflI	RGATCY	6 cut(s)	164, 1519, 1813, 2122, 2416, 2847
MhlI	GDGCHC	7 cut(s)	580, 671, 1611, 1752, 2214, 2355, 3877
MlsI	TGGCCA	2 cut(s)	1029, 4169
MluNI	TGGCCA	2 cut(s)	1029, 4169
MlyI	GAGTC	7 cut(s)	343, 1525, 1688, 2128, 2291, 3070, 3992
MmeI	TCCRAC	3 cut(s)	630, 3690, 3915
Mox20I	TGGCCA	2 cut(s)	1029, 4169
Mph1103I	ATGCAT	2 cut(s)	1444, 2047
MroXI	GAANNNNTTC	5 cut(s)	1351, 1954, 2721, 4219, 4289
MscI	TGGCCA	2 cut(s)	1029, 4169
Msp20I	TGGCCA	2 cut(s)	1029, 4169
MspA1I	CMGCKG	2 cut(s)	1252, 2990
MspCI	CTTAAG	1 cut(s)	4271
MspI	CCGG	6 cut(s)	616, 1374, 1460, 1977, 2666, 3302
MspR9I	CCNGG	6 cut(s)	1342, 1375, 1421, 1945, 1978, 2667
MssI	GTTTAAAC	1 cut(s)	766
MunI	CAATTG	1 cut(s)	3742
Mva1269I	GAATGC	1 cut(s)	3706
MvaI	CCWGG	3 cut(s)	1342, 1421, 1945
MvnI	CGCG	1 cut(s)	2608
NciI	CCSGG	3 cut(s)	1375, 1978, 2667
NcoI	CCATGG	2 cut(s)	835, 1030
NdeI	CATATG	1 cut(s)	319
NlaIV	GGNNCC	5 cut(s)	564, 1425, 2930, 3120, 3759
NmeAIII	GCCGAG	2 cut(s)	3063, 3173
NmuCI	GTSAC	3 cut(s)	3073, 3248, 3560
NsbI	TGCGCA	1 cut(s)	3828
NsiI	ATGCAT	2 cut(s)	1444, 2047
NspI	RCATGY	6 cut(s)	1442, 1490, 2045, 2093, 3581, 4270
NspV	TTCGAA	1 cut(s)	4223
PaeI	GCATGC	2 cut(s)	1442, 2045
PaeR7I	CTCGAG	2 cut(s)	1676, 2279
PagI	TCATGA	2 cut(s)	868, 4113
PauI	GCGCGC	1 cut(s)	2606
PceI	AGGCCT	2 cut(s)	2949, 3622
PciSI	GCTCTTC	4 cut(s)	1342, 1587, 1945, 2190
PctI	GAATGC	1 cut(s)	3706
PdmI	GAANNNNTTC	5 cut(s)	1351, 1954, 2721, 4219, 4289
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	8 cut(s)	1251, 1479, 2082, 2599, 2829, 3500, 3532, 3583
PleI	GAGTC	7 cut(s)	343, 1525, 1687, 2128, 2290, 3070, 3991
PmeI	GTTTAAAC	1 cut(s)	766
PpsI	GAGTC	7 cut(s)	343, 1525, 1687, 2128, 2290, 3070, 3991
PpuMI	RGGWCCY	3 cut(s)	1424, 2027, 2929
PshAI	GACNNNNGTC	2 cut(s)	1422, 2025
PshBI	ATTAAT	1 cut(s)	1235
PsiI	TTATAA	1 cut(s)	4158
Psp124BI	GAGCTC	4 cut(s)	1611, 1752, 2214, 2355
Psp5II	RGGWCCY	3 cut(s)	1424, 2027, 2929
Psp6I	CCWGG	3 cut(s)	1340, 1419, 1943
PspFI	CCCAGC	2 cut(s)	1795, 2398
PspGI	CCWGG	3 cut(s)	1340, 1419, 1943
PspN4I	GGNNCC	5 cut(s)	564, 1425, 2930, 3120, 3759
PspPI	GGNCC	4 cut(s)	1424, 2027, 2929, 3119
PspPPI	RGGWCCY	3 cut(s)	1424, 2027, 2929
PstI	CTGCAG	5 cut(s)	227, 910, 985, 1105, 1180
PstNI	CAGNNNCTG	5 cut(s)	383, 1744, 2347, 3341, 4176
PsuI	RGATCY	6 cut(s)	164, 1519, 1813, 2122, 2416, 2847
PteI	GCGCGC	1 cut(s)	2606
PvuII	CAGCTG	2 cut(s)	1252, 2990
SacI	GAGCTC	4 cut(s)	1611, 1752, 2214, 2355
SapI	GCTCTTC	4 cut(s)	1342, 1587, 1945, 2190
SatI	GCNGC	8 cut(s)	1250, 1478, 2081, 2598, 2828, 3499, 3531, 3582
Sau96I	GGNCC	4 cut(s)	1424, 2027, 2929, 3119
ScaI	AGTACT	3 cut(s)	1648, 2251, 4012
SchI	GAGTC	7 cut(s)	343, 1525, 1688, 2128, 2291, 3070, 3992
ScrFI	CCNGG	6 cut(s)	1342, 1375, 1421, 1945, 1978, 2667
SduI	GDGCHC	7 cut(s)	580, 671, 1611, 1752, 2214, 2355, 3877
SfaNI	GCATC	7 cut(s)	643, 651, 817, 1576, 2179, 3334, 3838
SfcI	CTRYAG	9 cut(s)	223, 906, 981, 1101, 1176, 1295, 2809, 2991, 3897
Sfr274I	CTCGAG	2 cut(s)	1676, 2279
SfuI	TTCGAA	1 cut(s)	4223
SinI	GGWCC	4 cut(s)	1424, 2027, 2929, 3119
SlaI	CTCGAG	2 cut(s)	1676, 2279
SpeI	ACTAGT	1 cut(s)	2522
SphI	GCATGC	2 cut(s)	1442, 2045
SseBI	AGGCCT	2 cut(s)	2949, 3622
SsiI	CCGC	2 cut(s)	3918, 3931
SspI	AATATT	4 cut(s)	865, 1060, 2804, 3437
SspMI	CTAG	7 cut(s)	747, 1614, 2024, 2217, 2523, 2777, 3663
SstI	GAGCTC	4 cut(s)	1611, 1752, 2214, 2355
StuI	AGGCCT	2 cut(s)	2949, 3622
StyD4I	CCNGG	6 cut(s)	1340, 1373, 1419, 1943, 1976, 2665
StyI	CCWWGG	4 cut(s)	835, 1030, 2023, 2776
TaaI	ACNGT	6 cut(s)	235, 771, 946, 1141, 3337, 4010
TaiI	ACGT	3 cut(s)	1400, 2003, 2956
TscAI	CASTG	4 cut(s)	238, 415, 1268, 3829
TseFI	GTSAC	3 cut(s)	3073, 3248, 3560
TseI	GCWGC	8 cut(s)	1249, 1477, 2080, 2597, 2827, 3498, 3530, 3581
Tsp45I	GTSAC	3 cut(s)	3073, 3248, 3560
TspRI	CASTG	4 cut(s)	238, 415, 1268, 3829
Van91I	CCANNNNNTGG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	4271
VneI	GTGCAC	1 cut(s)	576
VpaK11BI	GGWCC	4 cut(s)	1424, 2027, 2929, 3119
VspI	ATTAAT	1 cut(s)	1235
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	6 cut(s)	3037, 3446, 3691, 4026, 4108, 4184
XceI	RCATGY	6 cut(s)	1442, 1490, 2045, 2093, 3581, 4270
XhoI	CTCGAG	2 cut(s)	1676, 2279
XmaJI	CCTAGG	2 cut(s)	2023, 2776
XmiI	GTMKAC	2 cut(s)	342, 2687
XmnI	GAANNNNTTC	5 cut(s)	1351, 1954, 2721, 4219, 4289
XspI	CTAG	7 cut(s)	747, 1614, 2024, 2217, 2523, 2777, 3663
ZrmI	AGTACT	3 cut(s)	1648, 2251, 4012
Zsp2I	ATGCAT	2 cut(s)	1444, 2047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.