Rmu_sc0001322.1_g000015

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001322.1
OG0023064
Physical Location & Seq
Forward (+)
44047 .. 44717
671 bp
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UTR
Exon/CDS
Intron
Rmu_sc0001322.1_g000015.1.cds

Sequence Viewer

Length: 396 bp
atggaaggggatggcggtggtgcgatgccattgtcaagtgagaatgcgaaagaagagcagcaggggacgtcctacacttattgggtgaggcaagtgactgaggaagcggcgcctcccccggttcccagaaagctctcatctcaggatattctctccgcccaatctgagcctgccaccctcggctctctctggaatcgggctggaacttgggaggagaagaatgtcaataaatgggcgacagatagaatgaaggagttgcttgtatcagtgggttccgtggagttcccaggtggcaaagcacaaatatcagaagtctccaagtgtgtaggggatgtctctagtcctttccctctccccttcaatttgttttctttcctggaatatttaatgttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

131

Amino Acids

14.38

Weight (kDa)

4.64

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023064)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250335.1_g000001 Rmu_sc0001322.1_g000015
rosa_rugosa Rorug03G0297300
rosa_samantha Rh4DG000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 3 cut(s) 15, 107, 156
AcyI GRCGYC 2 cut(s) 68, 110
AgsI TTSAA 1 cut(s) 361
AjnI CCWGG 2 cut(s) 286, 375
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 319, 340
ApeKI GCWGC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 288, 377
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 319, 340
BfaI CTAG 2 cut(s) 339, 394
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 2 cut(s) 59, 108
BlsI GCNGC 2 cut(s) 60, 109
Bme1390I CCNGG 3 cut(s) 119, 288, 377
BmiI GGNNCC 3 cut(s) 111, 123, 274
BmrFI CCNGG 3 cut(s) 119, 288, 377
BmsI GCATC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 68, 110
BsaJI CCNNGG 4 cut(s) 117, 178, 276, 286
BseBI CCWGG 2 cut(s) 288, 377
BseDI CCNNGG 4 cut(s) 117, 178, 276, 286
BseGI GGATG 2 cut(s) 16, 337
BseMII CTCAG 3 cut(s) 90, 155, 156
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 319, 340
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 49
BspACI CCGC 3 cut(s) 15, 107, 156
BspCNI CTCAG 3 cut(s) 91, 154, 157
BspLI GGNNCC 3 cut(s) 111, 123, 274
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 117, 178, 276, 286
BssNI GRCGYC 2 cut(s) 68, 110
Bst2UI CCWGG 2 cut(s) 288, 377
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 2 cut(s) 68, 110
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 99, 141, 165
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 16, 337
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 319, 340
BstNI CCWGG 2 cut(s) 288, 377
BstSCI CCNGG 3 cut(s) 117, 286, 375
BstV1I GCAGC 1 cut(s) 70
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 16, 337
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 112
CviJI RGCY 4 cut(s) 133, 169, 183, 200
CviKI_1 RGCY 4 cut(s) 133, 169, 183, 200
DdeI CTNAG 3 cut(s) 99, 141, 165
DinI GGCGCC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 286, 375
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
FaqI GGGAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 59, 108
FokI GGATG 2 cut(s) 23, 344
Fsp4HI GCNGC 2 cut(s) 59, 108
FspBI CTAG 2 cut(s) 339, 394
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 59, 108
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 2 cut(s) 68, 110
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 166, 310
Hpy188III TCNNGA 2 cut(s) 143, 190
HpyAV CCTTC 2 cut(s) 244, 367
HpyCH4IV ACGT 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 99, 141, 165
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 2 cut(s) 68, 110
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 15
MaeI CTAG 2 cut(s) 339, 394
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 2 cut(s) 65, 229
MluCI AATT 1 cut(s) 361
Mly113I GGCGCC 1 cut(s) 110
MnlI CCTC 6 cut(s) 81, 94, 123, 188, 205, 360
MseI TTAA 1 cut(s) 386
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 3 cut(s) 119, 288, 377
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 2 cut(s) 288, 377
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 111, 123, 274
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 193
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 2 cut(s) 60, 109
PluTI GGCGCC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 286, 375
PspGI CCWGG 2 cut(s) 286, 375
PspN4I GGNNCC 3 cut(s) 111, 123, 274
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 59, 108
ScrFI CCNGG 3 cut(s) 119, 288, 377
SetI ASST 3 cut(s) 71, 135, 292
SfaNI GCATC 1 cut(s) 15
SfoI GGCGCC 1 cut(s) 111
Sse9I AATT 1 cut(s) 361
SsiI CCGC 3 cut(s) 15, 107, 156
SspDI GGCGCC 1 cut(s) 109
SspI AATATT 1 cut(s) 383
SspMI CTAG 2 cut(s) 339, 394
StyD4I CCNGG 3 cut(s) 117, 286, 375
TaiI ACGT 1 cut(s) 71
TasI AATT 1 cut(s) 361
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 1 cut(s) 273
XspI CTAG 2 cut(s) 339, 394
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.