Rorug03G0297300

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0023064
Physical Location & Seq
Reverse (-)
30676071 .. 30676340
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0297300.1

Sequence Viewer

Length: 270 bp
ATGAAGGGCAGAATCCACCCCCCCCCCCCCTGGAGGATCCAGAAGATTATCCAAGACATAAGAGTGATAAGACAGATAGCTTCCAACTTCGAGGTTATTACCTTCCATCATGTATTCAGGGAGGCGAACTTTGTTGCTGATGCTGTAGCAAATCTAGGCCATAGCTCTATAGATGGTTTTCAATGGTCCACTTCTTTACCGAGAAGTGCGTCTAATGCTCTCCACTTTGATGTTGTAAACTCTGGATGCCGTAGAGGCTTCCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

89

Amino Acids

10.11

Weight (kDa)

10.68

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 20 - 52 2.7e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023064)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250335.1_g000001 Rmu_sc0001322.1_g000015
rosa_rugosa Rorug03G0297300
rosa_samantha Rh4DG000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 31, 44
AfiI CCNNNNNNNGG 2 cut(s) 30, 33
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 3 cut(s) 80, 165, 265
AluI AGCT 3 cut(s) 80, 165, 265
AlwI GGATC 2 cut(s) 31, 44
AoxI GGCC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 186
AvaII GGWCC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 36
BccI CCATC 2 cut(s) 114, 167
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 144, 168
BglI GCCNNNNNGGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 130, 236
BpmI CTGGAG 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 33
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 30, 33
BshFI GGCC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 30, 33
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 31, 44
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 215, 255
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 144, 168
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 198
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 80, 159, 165, 258, 265
CviKI_1 RGCY 5 cut(s) 80, 159, 165, 258, 265
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 113
FaiI YATR 4 cut(s) 59, 111, 162, 170
FatI CATG 1 cut(s) 109
FokI GGATG 1 cut(s) 258
FspBI CTAG 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 113
HinfI GANTC 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 189, 238
Hpy188III TCNNGA 2 cut(s) 40, 243
Hpy8I GTNNAC 2 cut(s) 189, 238
HpyAV CCTTC 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 255
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 5 cut(s) 16, 43, 53, 103, 228
LweI GCATC 2 cut(s) 130, 236
MaeI CTAG 1 cut(s) 155
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 4 cut(s) 27, 85, 115, 248
MseI TTAA 1 cut(s) 268
MslI CAYNNNNRTG 2 cut(s) 62, 228
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 215, 255
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 36
RseI CAYNNNNRTG 2 cut(s) 62, 228
SaqAI TTAA 1 cut(s) 268
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 31
SetI ASST 5 cut(s) 82, 96, 104, 167, 267
SfaNI GCATC 2 cut(s) 130, 236
SfcI CTRYAG 2 cut(s) 144, 168
SinI GGWCC 1 cut(s) 186
SmiMI CAYNNNNRTG 2 cut(s) 62, 228
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 29
TaqI TCGA 1 cut(s) 90
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 186
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.