Rh4DG000600

Activator of Hsp90 ATPase, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0023064
Physical Location & Seq
Forward (+)
183038 .. 185829
2792 bp
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UTR
Exon/CDS
Intron
Rh4DG000600.1

Sequence Viewer

Length: 456 bp
ATGGAAGGGGATGGCGGTGGTGCGATGCCATTGTCAAGTGAGAATGCGAAAGAAGAGCAGCAGGGGACGTCCTACACTTATTGGGTGAGGCAAGTGACGGAGGAAGCGGCGCCTCCCCCGGTTCCCAGAATGCTCTCATCTCAGGATATTCTCTCCGCCCAATCTCAGCCTGCCACCCTCGGCTCTCTCTGGAATCGGGCTGGAACTTGGGAGGAGAAGAATGTCAATAAATGGGCGACAGATAGAATAAAGGAGTTGCTTGTATCAGTGGGTTCCGTGGAGTTCCCAGGTGGCAAAGCACAAATATCAGATGTCTCCAAGTGTGTAGGGGATGTGAGTCATAAACCCACTTTTTTCTGTTACTGTTTTTTTCTTTTTCCCTTTCAAGTCAGTCTCTTTGTAATGTATCCTGTATGCCAAAGTCCATCTCTGAAAAGGCTGATTGCAGGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aha1_N

Protein Analysis

151

Amino Acids

16.61

Weight (kDa)

5.4

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aha1_N PF09229 72 - 113 4.9e-07 Activator of Hsp90 ATPase, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023064)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8250335.1_g000001 Rmu_sc0001322.1_g000015
rosa_rugosa Rorug03G0297300
rosa_samantha Rh4DG000600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 3 cut(s) 15, 107, 156
AcyI GRCGYC 2 cut(s) 68, 110
AgsI TTSAA 1 cut(s) 386
AjnI CCWGG 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 319, 398
ApeKI GCWGC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 5, 433
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 417
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 319, 398
BfaI CTAG 1 cut(s) 454
BfoI RGCGCY 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 437
BfuI GTATCC 1 cut(s) 417
BisI GCNGC 2 cut(s) 59, 108
BlsI GCNGC 2 cut(s) 60, 109
Bme1390I CCNGG 2 cut(s) 119, 288
BmiI GGNNCC 3 cut(s) 111, 123, 274
BmrFI CCNGG 2 cut(s) 119, 288
BmsI GCATC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 68, 110
BsaJI CCNNGG 4 cut(s) 117, 178, 276, 286
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 117, 178, 276, 286
BseGI GGATG 2 cut(s) 16, 337
BseMII CTCAG 2 cut(s) 155, 179
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 319, 398
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 2 cut(s) 49, 135
BspACI CCGC 3 cut(s) 15, 107, 156
BspCNI CTCAG 2 cut(s) 154, 178
BspLI GGNNCC 3 cut(s) 111, 123, 274
BspMI ACCTGC 1 cut(s) 437
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 117, 178, 276, 286
BssNI GRCGYC 2 cut(s) 68, 110
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 2 cut(s) 68, 110
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 141, 165
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 16, 337
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 319, 398
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 117, 286
BstV1I GCAGC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 16, 337
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 112
CviJI RGCY 4 cut(s) 169, 183, 200, 439
CviKI_1 RGCY 4 cut(s) 169, 183, 200, 439
DdeI CTNAG 2 cut(s) 141, 165
DinI GGCGCC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 286
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
FaiI YATR 2 cut(s) 342, 415
FaqI GGGAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 59, 108
FokI GGATG 2 cut(s) 23, 344
Fsp4HI GCNGC 2 cut(s) 59, 108
FspBI CTAG 1 cut(s) 454
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 59, 108
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 2 cut(s) 68, 110
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 193, 337
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 310, 432
Hpy188III TCNNGA 2 cut(s) 143, 190
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 446
HpyF3I CTNAG 2 cut(s) 141, 165
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 2 cut(s) 68, 110
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 48
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 454
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 2 cut(s) 94, 359
MboII GAAGA 2 cut(s) 65, 229
Mly113I GGCGCC 1 cut(s) 110
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 5 cut(s) 81, 94, 123, 188, 205
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 119, 288
Mva1269I GAATGC 2 cut(s) 49, 135
MvaI CCWGG 1 cut(s) 288
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 111, 123, 274
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 2 cut(s) 49, 135
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 2 cut(s) 60, 109
PleI GAGTC 1 cut(s) 345
PluTI GGCGCC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 111, 123, 274
SapI GCTCTTC 1 cut(s) 48
SatI GCNGC 2 cut(s) 59, 108
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 119, 288
SetI ASST 3 cut(s) 71, 292, 451
SfaNI GCATC 1 cut(s) 15
SfoI GGCGCC 1 cut(s) 111
SsiI CCGC 3 cut(s) 15, 107, 156
SspDI GGCGCC 1 cut(s) 109
SspMI CTAG 1 cut(s) 454
StyD4I CCNGG 2 cut(s) 117, 286
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 71
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 94
TspGWI ACGGA 2 cut(s) 113, 265
TspRI CASTG 1 cut(s) 273
XspI CTAG 1 cut(s) 454
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.