Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001353.1

Orthogroup ID

OG0025509

Physical Location & Seq

Genomic Coordinates Reverse (-)

41594 .. 43301

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001353.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgttgaagcggaaggcgtcatataagaagatgttctcccccatcatctccggtacgagcccctcaaggccatcaccgaccataatccagcagttgtcatcaggtctgggagcccaatctctagtccaagtcgaggagacctctctcgccaacctagattccgccgccggcgctcttcagctgttcagctctcttctgcctcctgcacttaggaatgatggagcgcttttggtcacattggatggcaaggtagtttctgtcaaccccaagacgatggagactgagtgggccttgtcctctggctcccaaattcactcttcctataagagcttctcttatttcaacaactgcaggagtgatgatgatcactctttcattgatattggtgaagacaggaccctctatcgtcacaacaacaccaacaagaagaagtgggatgttgatttgattaaaatgaggtttgtttcttcgagtagaaacaaaatgtatgatttgattaaaataagagcctgtcatcttgcaaagcaagcctttgatgaagctatctccgagctggatactttgagtgaggagtcatacaaggacaacaccttaatcatgcaactcttgagggacaacctcacattgtggacctctgacattccgaaggatggaggtaattataagttattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006983 GO:0006984 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010467 GO:0010506 GO:0010508 GO:0012505 GO:0014070 GO:0016020 GO:0016070 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0033554 GO:0034263 GO:0034641 GO:0034976 GO:0035966 GO:0042175 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071216 GO:0071704 GO:0090304 GO:0098542 GO:0098827 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010

Pfam Domains

Protein Families

PQQ Pkinase Ribonuc_2-5A

Protein Analysis

224

Amino Acids

25.07

Weight (kDa)

7.73

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025509)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001353.1_g000012 Rmu_sc0002784.1_g000068
rosa_samantha	Rh4CG320300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	663, 673
AciI	CCGC	3 cut(s)	10, 162, 165
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	17
AdeI	CACNNNGTG	1 cut(s)	627
AfaI	GTAC	1 cut(s)	55
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	133, 650
AgsI	TTSAA	2 cut(s)	7, 343
AluBI	AGCT	5 cut(s)	181, 189, 330, 542, 553
AluI	AGCT	5 cut(s)	181, 189, 330, 542, 553
Alw26I	GTCTC	2 cut(s)	131, 272
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	68, 288
ApoI	RAATTY	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	173, 226
AspS9I	GGNCC	3 cut(s)	288, 396, 630
AsuHPI	GGTGA	2 cut(s)	66, 398
AvaII	GGWCC	2 cut(s)	396, 630
BanII	GRGCYC	2 cut(s)	62, 115
BbsI	GAAGAC	1 cut(s)	396
BccI	CCATC	6 cut(s)	50, 79, 212, 236, 268, 644
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	131, 272
BfaI	CTAG	2 cut(s)	122, 155
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	2 cut(s)	174, 227
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	396, 630
BmgT120I	GGNCC	3 cut(s)	288, 396, 630
BmiI	GGNNCC	3 cut(s)	112, 304, 398
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuEI	CTTGAG	2 cut(s)	49, 628
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 650
Bse118I	RCCGGY	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	363
BseGI	GGATG	3 cut(s)	247, 442, 655
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	133, 650
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	2 cut(s)	149, 584
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	70, 290
BsiSI	CCGG	2 cut(s)	51, 168
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	133, 650
BsmAI	GTCTC	2 cut(s)	131, 272
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	70, 290
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	62, 115
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	3 cut(s)	10, 162, 165
BspANI	GGCC	2 cut(s)	70, 290
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	112, 304, 398
BspMAI	CTGCAG	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	180
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	17
Bst6I	CTCTTC	3 cut(s)	180, 198, 322
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	169, 528
BstDEI	CTNAG	2 cut(s)	209, 282
BstF5I	GGATG	3 cut(s)	247, 442, 655
BstH2I	RGCGCY	2 cut(s)	174, 227
BstHHI	GCGC	2 cut(s)	173, 226
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	131, 272
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 527
BstSFI	CTRYAG	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	70, 290
BtsCI	GGATG	3 cut(s)	247, 442, 655
Cac8I	GCNNGC	2 cut(s)	169, 528
CfoI	GCGC	2 cut(s)	173, 226
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	288, 396, 630
CseI	GACGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	598
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	209, 282
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DraIII	CACNNNGTG	1 cut(s)	627
Eam1104I	CTCTTC	3 cut(s)	180, 198, 322
EarI	CTCTTC	3 cut(s)	180, 198, 322
EciI	GGCGGA	1 cut(s)	151
Eco24I	GRGCYC	2 cut(s)	62, 115
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	396, 630
Eco47III	AGCGCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	62, 115
FaeI	CATG	1 cut(s)	601
FaiI	YATR	9 cut(s)	22, 24, 83, 324, 489, 577, 599, 663, 673
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	254, 449, 662
FriOI	GRGCYC	2 cut(s)	62, 115
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	122, 155
GlaI	GCGC	2 cut(s)	172, 225
GluI	GCNGC	1 cut(s)	165
HaeII	RGCGCY	2 cut(s)	174, 227
HaeIII	GGCC	2 cut(s)	70, 290
HapII	CCGG	2 cut(s)	51, 168
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	2 cut(s)	173, 226
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	2 cut(s)	171, 224
HinP1I	GCGC	2 cut(s)	171, 224
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	158, 572
HpaII	CCGG	2 cut(s)	51, 168
HphI	GGTGA	2 cut(s)	66, 398
Hpy166II	GTNNAC	2 cut(s)	262, 630
Hpy188I	TCNGA	3 cut(s)	550, 637, 645
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	2 cut(s)	262, 630
HpyAV	CCTTC	2 cut(s)	7, 640
HpyCH4V	TGCA	4 cut(s)	206, 351, 521, 601
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 527
HpyF3I	CTNAG	2 cut(s)	209, 282
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	2 cut(s)	171, 224
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	110, 221, 308
MaeI	CTAG	2 cut(s)	122, 155
MaeIII	GTNAC	2 cut(s)	232, 407
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	40, 167, 185, 309, 401, 439, 459
MhlI	GDGCHC	2 cut(s)	62, 115
MluCI	AATT	2 cut(s)	309, 658
MlyI	GAGTC	1 cut(s)	581
MreI	CGCCGGCG	1 cut(s)	167
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	450, 498, 593
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	2 cut(s)	51, 168
MwoI	GCNNNNNNNGC	2 cut(s)	170, 527
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	364
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	3 cut(s)	112, 304, 398
NmuCI	GTSAC	2 cut(s)	232, 407
PciSI	GCTCTTC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PpuMI	RGGWCCY	1 cut(s)	396
PsiI	TTATAA	2 cut(s)	663, 673
Psp5II	RGGWCCY	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	112, 304, 398
PspPI	GGNCC	3 cut(s)	288, 396, 630
PspPPI	RGGWCCY	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	450, 498, 593
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	3 cut(s)	288, 396, 630
SchI	GAGTC	1 cut(s)	581
SduI	GDGCHC	2 cut(s)	62, 115
SfcI	CTRYAG	1 cut(s)	349
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	396, 630
SmlI	CTYRAG	2 cut(s)	64, 607
SmoI	CTYRAG	2 cut(s)	64, 607
Sse9I	AATT	2 cut(s)	309, 658
SsiI	CCGC	3 cut(s)	10, 162, 165
SspMI	CTAG	2 cut(s)	122, 155
TaqI	TCGA	2 cut(s)	132, 470
TasI	AATT	2 cut(s)	309, 658
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	3 cut(s)	450, 498, 593
Tru9I	TTAA	3 cut(s)	450, 498, 593
TseFI	GTSAC	2 cut(s)	232, 407
Tsp45I	GTSAC	2 cut(s)	232, 407
TspDTI	ATGAA	2 cut(s)	364, 552
VpaK11BI	GGWCC	2 cut(s)	396, 630
XapI	RAATTY	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	122, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.