Rmu_sc0001488.1_g000007

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001488.1
OG0019324
Physical Location & Seq
Forward (+)
23738 .. 24775
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
atgttagacatcgactacatcagagattttggtggaacatgctatgttgattttgtgaaatttgttgatggtgcactttcagtgcatgattggtccaacataaaaaaatttcgtctgtcttgtcccggggtcttttatgacgatgacgaacgtattatctatgttattccgacatcaggctgtttctcaagtctcaagtccctaaaccttttgctactttatcaagattctcccagcattgaaaagcttattactaactgctgccctgtagttgaagatctggaaattcgtggagatatcaggcttccacatgatatatcgatattcaacatctctgcacctaacttgaagaagttaactgtggatttcgacctatcgattaggggtcgttcgtcaaatgttctaataaaagccccaaagcttgaaagcctttacttcaagaggaaacacttactatattccgcttatacattggagaatccagaatccctaaacagcgcagtaattgacgtcgctgagtgtctgtctgggagtgctaacggttttatgactgagcttctggcaggaatttctggtgttaaagatttgtacattagagctgcttttttggagacctgcaatctccctgcagattttagtatactgaacaagttggagttaattctttatcataactcctatagggaatatgtaaccaagtttctcaataagtcaccaaacctagaatatcttgtcttggagctcgacaacaaatatctacaagaagggcagtctttcacaccaccggagtttgtgcctgtttgcttgtcgtcgcacctcaagaaaatgtacatgaggggattcagtgggcggtggggggagttggaagtgttaaattacttgctgcggtacggtgaagttttgaatgagttggccatctctagtcatccaactcttggccatagaaaagaagaatcattgtacaaggaaatattacaatttccccgggcttcgaggacttgtgaagttaaatttttgtccagcttactttctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

345

Amino Acids

39.27

Weight (kDa)

5.73

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 262 - 306 2.3e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019324)

Species Orthologous Gene IDs
pyrus_communis pycom111g00870
rosa_chinensis RchiOBHm_Chr4g0416371
rosa_multiflora Rmu_sc0001488.1_g000007
rosa_rugosa Rorug04G0141400
rosa_samantha Rh4BG201000 Rh4CG215000 Rh4DG200900
rosa_wichuraiana Rw4G017230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 513
Acc36I ACCTGC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 935
AccI GTMKAC 1 cut(s) 640
AciI CCGC 3 cut(s) 462, 850, 886
AcoI YGGCCR 2 cut(s) 912, 937
AcsI RAATTY 5 cut(s) 59, 107, 285, 567, 1010
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 4 cut(s) 590, 830, 890, 962
AfiI CCNNNNNNNGG 2 cut(s) 176, 935
AgsI TTSAA 7 cut(s) 242, 275, 328, 349, 425, 439, 904
AluBI AGCT 7 cut(s) 247, 421, 556, 599, 742, 1023, 1035
AluI AGCT 7 cut(s) 247, 421, 556, 599, 742, 1023, 1035
Alw21I GWGCWC 2 cut(s) 76, 744
Alw26I GTCTC 2 cut(s) 197, 605
Alw44I GTGCAC 1 cut(s) 72
Ama87I CYCGRG 2 cut(s) 125, 984
AoxI GGCC 2 cut(s) 912, 937
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 3 cut(s) 261, 599, 883
ApoI RAATTY 5 cut(s) 59, 107, 285, 567, 1010
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 4 cut(s) 126, 127, 985, 986
AsuHPI GGTGA 2 cut(s) 705, 905
AvaI CYCGRG 2 cut(s) 125, 984
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 2 cut(s) 914, 939
BanII GRGCYC 1 cut(s) 744
Bbv12I GWGCWC 2 cut(s) 76, 744
BbvI GCAGC 3 cut(s) 248, 586, 870
BccI CCATC 2 cut(s) 62, 923
BcnI CCSGG 4 cut(s) 126, 127, 985, 986
BcoDI GTCTC 2 cut(s) 197, 605
BfaI CTAG 4 cut(s) 722, 921, 1032, 1036
BfmI CTRYAG 3 cut(s) 267, 627, 679
BfuAI ACCTGC 1 cut(s) 623
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 262, 600, 884
BlsI GCNGC 3 cut(s) 263, 601, 885
Bme1390I CCNGG 4 cut(s) 126, 127, 985, 986
Bme18I GGWCC 1 cut(s) 93
BmeT110I CYCGRG 2 cut(s) 125, 984
BmgT120I GGNCC 1 cut(s) 93
BmrFI CCNGG 4 cut(s) 126, 127, 985, 986
BpuEI CTTGAG 3 cut(s) 172, 179, 803
BpuMI CCSGG 4 cut(s) 126, 127, 985, 986
Bsa29I ATCGAT 2 cut(s) 320, 377
BsaHI GRCGYC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 125, 126, 983, 984
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 935
BseCI ATCGAT 2 cut(s) 320, 377
BseDI CCNNGG 4 cut(s) 125, 126, 983, 984
BseGI GGATG 1 cut(s) 925
BseLI CCNNNNNNNGG 2 cut(s) 176, 935
BseMII CTCAG 2 cut(s) 507, 543
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 248, 586, 870
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 914, 939
BshVI ATCGAT 2 cut(s) 320, 377
BsiHKAI GWGCWC 2 cut(s) 76, 744
BsiHKCI CYCGRG 2 cut(s) 125, 984
BsiSI CCGG 3 cut(s) 126, 785, 985
BslFI GGGAC 2 cut(s) 108, 184
BslI CCNNNNNNNGG 2 cut(s) 176, 935
BsmAI GTCTC 2 cut(s) 197, 605
BsmFI GGGAC 2 cut(s) 108, 184
BsnI GGCC 2 cut(s) 914, 939
Bso31I GGTCTC 1 cut(s) 605
BsoBI CYCGRG 2 cut(s) 125, 984
Bsp1286I GDGCHC 2 cut(s) 76, 744
Bsp1407I TGTACA 3 cut(s) 588, 828, 960
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 3 cut(s) 462, 850, 886
BspANI GGCC 2 cut(s) 914, 939
BspCNI CTCAG 2 cut(s) 508, 544
BspDI ATCGAT 2 cut(s) 320, 377
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 605
BsrGI TGTACA 3 cut(s) 588, 828, 960
BssECI CCNNGG 4 cut(s) 125, 126, 983, 984
BssMI GATC 1 cut(s) 277
BssNAI GTATAC 1 cut(s) 641
BssNI GRCGYC 1 cut(s) 510
Bst1107I GTATAC 1 cut(s) 641
Bst4CI ACNGT 3 cut(s) 361, 542, 893
BstACI GRCGYC 1 cut(s) 510
BstAUI TGTACA 3 cut(s) 588, 828, 960
BstDEI CTNAG 2 cut(s) 516, 552
BstF5I GGATG 1 cut(s) 925
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 2 cut(s) 197, 605
BstMBI GATC 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 4 cut(s) 124, 125, 983, 984
BstSFI CTRYAG 3 cut(s) 267, 627, 679
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 248, 586, 870
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BstZ17I GTATAC 1 cut(s) 641
Bsu15I ATCGAT 2 cut(s) 320, 377
BsuRI GGCC 2 cut(s) 914, 939
BsuTUI ATCGAT 2 cut(s) 320, 377
BtsCI GGATG 1 cut(s) 925
BtsIMutI CAGTG 2 cut(s) 87, 850
BveI ACCTGC 1 cut(s) 623
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 93
Cfr9I CCCGGG 2 cut(s) 125, 984
ClaI ATCGAT 2 cut(s) 320, 377
Csp6I GTAC 4 cut(s) 589, 829, 889, 961
CviAII CATG 4 cut(s) 39, 86, 311, 832
CviQI GTAC 4 cut(s) 589, 829, 889, 961
DdeI CTNAG 2 cut(s) 516, 552
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 912, 937
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 742
Eco88I CYCGRG 2 cut(s) 125, 984
EcoICRI GAGCTC 1 cut(s) 742
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 744
FaeI CATG 4 cut(s) 42, 89, 314, 835
FaqI GGGAC 2 cut(s) 108, 184
FatI CATG 4 cut(s) 38, 85, 310, 831
FblI GTMKAC 1 cut(s) 640
Fnu4HI GCNGC 3 cut(s) 262, 600, 884
FokI GGATG 1 cut(s) 912
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 3 cut(s) 262, 600, 884
FspBI CTAG 4 cut(s) 722, 921, 1032, 1036
GlaI GCGC 1 cut(s) 499
GluI GCNGC 3 cut(s) 262, 600, 884
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 2 cut(s) 914, 939
HapII CCGG 3 cut(s) 126, 785, 985
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 4 cut(s) 42, 89, 314, 835
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 2 cut(s) 245, 419
HinfI GANTC 5 cut(s) 227, 478, 485, 840, 953
HpaI GTTAAC 1 cut(s) 357
HpaII CCGG 3 cut(s) 126, 785, 985
HphI GGTGA 2 cut(s) 705, 905
Hpy166II GTNNAC 3 cut(s) 74, 357, 641
Hpy188I TCNGA 2 cut(s) 23, 171
Hpy188III TCNNGA 5 cut(s) 224, 281, 439, 482, 820
Hpy8I GTNNAC 3 cut(s) 74, 357, 641
Hpy99I CGWCG 2 cut(s) 515, 814
HpyAV CCTTC 1 cut(s) 758
HpyCH4III ACNGT 3 cut(s) 361, 542, 893
HpyCH4IV ACGT 2 cut(s) 151, 510
HpyCH4V TGCA 5 cut(s) 74, 85, 338, 618, 629
HpyF3I CTNAG 2 cut(s) 516, 552
HpySE526I ACGT 2 cut(s) 151, 510
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 4 cut(s) 42, 89, 314, 835
HspAI GCGC 1 cut(s) 498
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 3 cut(s) 248, 586, 870
MaeI CTAG 4 cut(s) 722, 921, 1032, 1036
MaeII ACGT 2 cut(s) 151, 510
MaeIII GTNAC 2 cut(s) 691, 711
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 3 cut(s) 287, 361, 962
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 76, 744
MlsI TGGCCA 2 cut(s) 914, 939
MluCI AATT 9 cut(s) 59, 107, 285, 504, 567, 660, 874, 977, 1010
MluNI TGGCCA 2 cut(s) 914, 939
MmeI TCCRAC 5 cut(s) 120, 194, 633, 843, 953
MnlI CCTC 4 cut(s) 435, 827, 828, 987
Mox20I TGGCCA 2 cut(s) 914, 939
MscI TGGCCA 2 cut(s) 914, 939
MseI TTAA 5 cut(s) 356, 579, 659, 872, 1008
Msp20I TGGCCA 2 cut(s) 914, 939
MspI CCGG 3 cut(s) 126, 785, 985
MspR9I CCNGG 4 cut(s) 126, 127, 985, 986
NciI CCSGG 4 cut(s) 126, 127, 985, 986
NdeII GATC 1 cut(s) 277
NlaIII CATG 4 cut(s) 42, 89, 314, 835
NmuCI GTSAC 1 cut(s) 711
NspI RCATGY 1 cut(s) 42
PfeI GAWTC 5 cut(s) 227, 478, 485, 840, 953
PflMI CCANNNNNTGG 1 cut(s) 935
PkrI GCNGC 3 cut(s) 263, 601, 885
Psp124BI GAGCTC 1 cut(s) 744
PspFI CCCAGC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 4 cut(s) 590, 830, 890, 962
RsaNI GTAC 4 cut(s) 589, 829, 889, 961
SacI GAGCTC 1 cut(s) 744
SaqAI TTAA 5 cut(s) 356, 579, 659, 872, 1008
SatI GCNGC 3 cut(s) 262, 600, 884
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 4 cut(s) 126, 127, 985, 986
SduI GDGCHC 2 cut(s) 76, 744
SfcI CTRYAG 3 cut(s) 267, 627, 679
SinI GGWCC 1 cut(s) 93
SmaI CCCGGG 2 cut(s) 127, 986
SmlI CTYRAG 3 cut(s) 187, 194, 818
SmoI CTYRAG 3 cut(s) 187, 194, 818
Sse9I AATT 9 cut(s) 59, 107, 285, 504, 567, 660, 874, 977, 1010
SsiI CCGC 3 cut(s) 462, 850, 886
SspI AATATT 1 cut(s) 972
SspMI CTAG 4 cut(s) 722, 921, 1032, 1036
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 4 cut(s) 124, 125, 983, 984
TaaI ACNGT 3 cut(s) 361, 542, 893
TaiI ACGT 2 cut(s) 154, 513
TaqI TCGA 6 cut(s) 12, 320, 369, 377, 744, 992
TasI AATT 9 cut(s) 59, 107, 285, 504, 567, 660, 874, 977, 1010
TatI WGTACW 3 cut(s) 588, 828, 960
TfiI GAWTC 5 cut(s) 227, 478, 485, 840, 953
Tru1I TTAA 5 cut(s) 356, 579, 659, 872, 1008
Tru9I TTAA 5 cut(s) 356, 579, 659, 872, 1008
TscAI CASTG 2 cut(s) 87, 850
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 3 cut(s) 261, 599, 883
Tsp45I GTSAC 1 cut(s) 711
TspMI CCCGGG 2 cut(s) 125, 984
TspRI CASTG 2 cut(s) 87, 850
Van91I CCANNNNNTGG 1 cut(s) 935
VneI GTGCAC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 5 cut(s) 59, 107, 285, 567, 1010
XceI RCATGY 1 cut(s) 42
XmaI CCCGGG 2 cut(s) 125, 984
XmiI GTMKAC 1 cut(s) 640
XspI CTAG 4 cut(s) 722, 921, 1032, 1036
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.