Rmu_sc0001551.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001551.1
OG0025513
Physical Location & Seq
Forward (+)
14312 .. 15832
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001551.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgctcgtccagcccgattccggcacgattttgacgggaccgccttcctcttctccaggtcctcttctccagtcgctcacctgcagcccatctctgatcggtctcagtttggtgaggttccggcaccgcagcgggatgggagcttcagatcgcctacgctgggagtaccttcagttgaagacacccaaagaattgtgggatgcccttaagggacgttttggaaacattcatgactctttgctcccagaaatggccgttcagtggaatgaaatccgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcgcttagttaaaggcacgtctcaatttctgtggaagggaaatcacagaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

124

Amino Acids

14.15

Weight (kDa)

9.91

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025513)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001551.1_g000001 Rmu_sc0002993.1_g000002 Rmu_sc0003024.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 123
AciI CCGC 4 cut(s) 41, 127, 132, 274
AcoI YGGCCR 1 cut(s) 252
AcuI CTGAAG 2 cut(s) 129, 155
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 4 cut(s) 20, 160, 250, 261
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 178, 307
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 107, 345
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 84, 129
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 38, 59
AsuHPI GGTGA 2 cut(s) 70, 124
AvaII GGWCC 2 cut(s) 38, 59
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 96, 141
BccI CCATC 2 cut(s) 97, 130
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 107, 345
BfmI CTRYAG 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 2 cut(s) 85, 130
BlsI GCNGC 2 cut(s) 86, 131
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 38, 59
BmgBI CACGTC 1 cut(s) 339
BmgT120I GGNCC 2 cut(s) 38, 59
BmiI GGNNCC 3 cut(s) 39, 119, 125
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 2 cut(s) 39, 53
BsaI GGTCTC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 160, 250, 261
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 141, 205
BseLI CCNNNNNNNGG 4 cut(s) 20, 160, 250, 261
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 96, 141
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 21, 121
BslFI GGGAC 2 cut(s) 51, 225
BslI CCNNNNNNNGG 4 cut(s) 20, 160, 250, 261
BsmAI GTCTC 2 cut(s) 107, 345
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 51, 225
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 96, 148
BspACI CCGC 4 cut(s) 41, 127, 132, 274
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 39, 119, 125
BspMAI CTGCAG 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 70
BssMI GATC 2 cut(s) 96, 148
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 2 cut(s) 55, 69
BstAFI CTTAAG 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 104, 325
BstF5I GGATG 2 cut(s) 141, 205
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 99, 151
BstMAI GTCTC 2 cut(s) 107, 345
BstMBI GATC 2 cut(s) 96, 148
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 96, 141
BstV2I GAAGAC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 254
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 141, 205
BtsIMutI CAGTG 1 cut(s) 266
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 278
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 38, 59
Csp6I GTAC 1 cut(s) 166
CspCI CAANNNNNGTGG 2 cut(s) 332, 367
CviAII CATG 2 cut(s) 230, 316
CviJI RGCY 4 cut(s) 13, 87, 143, 254
CviKI_1 RGCY 4 cut(s) 13, 87, 143, 254
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 104, 325
DpnI GATC 2 cut(s) 98, 150
DpnII GATC 2 cut(s) 96, 148
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 55, 69
EarI CTCTTC 2 cut(s) 55, 69
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 38, 59
Eco57I CTGAAG 2 cut(s) 129, 155
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 2 cut(s) 233, 319
FaiI YATR 3 cut(s) 231, 317, 373
FaqI GGGAC 2 cut(s) 51, 225
FatI CATG 2 cut(s) 229, 315
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 85, 130
FokI GGATG 2 cut(s) 148, 212
Fsp4HI GCNGC 2 cut(s) 85, 130
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 85, 130
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 2 cut(s) 39, 53
HaeIII GGCC 1 cut(s) 254
HapII CCGG 2 cut(s) 21, 121
HhaI GCGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 233, 319
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HinfI GANTC 2 cut(s) 17, 233
HpaII CCGG 2 cut(s) 21, 121
HphI GGTGA 2 cut(s) 70, 124
Hpy188I TCNGA 2 cut(s) 96, 148
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 54, 179, 349
HpyCH4IV ACGT 2 cut(s) 214, 338
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 104, 325
HpySE526I ACGT 2 cut(s) 214, 338
Hsp92II CATG 2 cut(s) 233, 319
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 96, 148
LmnI GCTCC 2 cut(s) 140, 246
LpnPI CCDG 9 cut(s) 23, 34, 42, 69, 83, 94, 134, 145, 258
Lsp1109I GCAGC 2 cut(s) 96, 141
LweI GCATC 1 cut(s) 190
MaeII ACGT 2 cut(s) 214, 338
MalI GATC 2 cut(s) 98, 150
MboI GATC 2 cut(s) 96, 148
MboII GAAGA 3 cut(s) 42, 56, 190
MluCI AATT 2 cut(s) 191, 344
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 3 cut(s) 58, 72, 108
MseI TTAA 2 cut(s) 207, 330
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 2 cut(s) 21, 121
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 96, 148
NlaIII CATG 2 cut(s) 233, 319
NlaIV GGNNCC 3 cut(s) 39, 119, 125
NspI RCATGY 1 cut(s) 319
PagI TCATGA 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 89
PciI ACATGT 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 86, 131
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 59
PscI ACATGT 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 39, 119, 125
PspPI GGNCC 2 cut(s) 38, 59
PspPPI RGGWCCY 1 cut(s) 59
PstI CTGCAG 1 cut(s) 86
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 207, 330
SatI GCNGC 2 cut(s) 85, 130
Sau3AI GATC 2 cut(s) 96, 148
Sau96I GGNCC 2 cut(s) 38, 59
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 57
SetI ASST 7 cut(s) 61, 83, 119, 145, 171, 217, 341
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 82
SinI GGWCC 2 cut(s) 38, 59
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 191, 344
SsiI CCGC 4 cut(s) 41, 127, 132, 274
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 2 cut(s) 217, 341
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 191, 344
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 207, 330
Tru9I TTAA 2 cut(s) 207, 330
TscAI CASTG 1 cut(s) 266
TseI GCWGC 2 cut(s) 84, 129
TspDTI ATGAA 2 cut(s) 218, 282
TspRI CASTG 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 38, 59
XceI RCATGY 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.